Search results

Jump to navigation Jump to search

Page title matches

Page text matches

  • User:Achander
    User Support and Services Team, Research Computing Facilitator UFIT Research Computing
    160 bytes (19 words) - 17:22, 16 September 2023
  • User:Cabreraruizdiazj
    Research Computing Facilitator UFIT Research Computing
    240 bytes (37 words) - 15:44, 18 January 2024
  • User:Moskalenko
    :User Support and Services Team Manager, Research Computing Facilitator, Biocomputing Specialist :UFIT Research Computing
    295 bytes (41 words) - 14:21, 19 May 2023
  • Mailing Lists
    The UF Research Computing maintains the following public mailing lists: ....ufl.edu/cgi-bin/wa?A0=HPC-ANNOUNCE-L HPC announcement list]. All Research Computing users are automatically subscribed to this list, so they receive announceme
    778 bytes (110 words) - 20:34, 2 August 2021
  • Gaussian License
    In order to use Gaussian at the Research Computing, users must fill out and sign a license agreement first. The license may be signed by contacting the Research Computing, and we can setup an appointment for you to come in and sign the appropriat
    1 KB (185 words) - 14:26, 30 June 2017
  • Project:General disclaimer
    See the Research Computing [http://www.rc.ufl.edu/about/policies/ Policies] for details.
    88 bytes (14 words) - 18:12, 21 June 2017
  • File:RC Billing Request Form.pdf
    UF Research Computing Billing Request For for new investments.
    (53 KB) - 23:16, 30 June 2016
  • Non Batch-System Resources
    ==UF Research Computing Non-Batch System Resources==
    569 bytes (90 words) - 20:04, 2 August 2021
  • Project:Privacy policy
    All UF Research Computing Websites follow the [http://privacy.ufl.edu/privacystatement.html Universit
    130 bytes (18 words) - 14:39, 30 March 2023
  • User:Jstrds
    Research Computing Facilitator Linux Research Support
    739 bytes (103 words) - 17:00, 4 October 2017
  • Category:Biology
    [[Category:Research]][[Category:Software]] Biological Computing Category in the UF HPC Wiki
    985 members (9 subcategories, 0 files) - 17:21, 3 June 2022
  • Help:Contents
    To ask for UF Research Computing Help please go to our [http://support.rc.ufl.edu Support System] website.
    374 bytes (71 words) - 02:32, 28 August 2014
  • User:Malex
    :UFIT Research Computing :Cancer Genetics Research Complex (CGRC), Rm. 119
    340 bytes (48 words) - 18:50, 7 July 2017
  • AI Examples
    The UFIT Research Computing AI Support Team maintains a suite of examples for computer vision and natur == Research Computing Github ==
    3 KB (367 words) - 18:50, 30 August 2022
  • Biology
    ...keep reading. We believe that the success of our support of the biological computing efforts at UF depends on the stability of the four main corner stones - har ...world renowned [http://wiki.g2.bx.psu.edu/ Galaxy] platform for biological computing at UFRC. Please read the UFRC Galaxy [[Galaxy|documentation]] or proceed di
    4 KB (665 words) - 21:23, 14 December 2022
  • Blocked Accounts
    * You receive an email from Research Computing stating you have violated a policy on the cluster. If you have not received an email from Research Computing, but cannot login, please allow up to 15 minutes for the account to be acce
    2 KB (337 words) - 21:37, 29 January 2024
  • MASSMINE
    MassMine is a research tool designed to simplify the collection and use of data from social media == Using MassMine on Research Computing ==
    4 KB (562 words) - 15:42, 14 December 2022
  • AI Reference Datasets
    ...searcher convenience, efficient use of filesystem space, and cost savings. Research groups do not have to use their Blue or Orange quota to host their own copi ...'''All reference datasets hosted on HiPerGator must comply with Research Computing's [[AI reference dataset hosting policy]]'''.
    2 KB (256 words) - 15:03, 28 September 2021
  • Software Development Policies
    ...rld, e.g. as part of PubApps, will a security review be required. Research Computing staff will need to be involved as well as Information Security Office.
    533 bytes (84 words) - 15:43, 19 August 2022
  • File System Quotas
    ...illing the filesystem, which could result in job failures for all Research Computing users. Log in to your Research Computing account using SSH and use the blue_quota or orange_quota command to see the
    3 KB (428 words) - 18:50, 15 February 2021
  • 4p
    4P (Parallel Processing of Polymorphism Panels) is a software for computing If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (285 words) - 20:36, 11 August 2022
  • Get Help
    {{Note|There is no direct support for students using Research Computing resources for class work. See the [https://www.rc.ufl.edu/get-support/class If you are a UFIT Research Computing client using HiPerGator and related infrastructure sometimes you may not be
    5 KB (801 words) - 13:21, 26 March 2024
  • GatorLink Affiliate Account
    ...unt created through the Sponsor's department a sponsor can ask UF Research Computing to request a UFRC affiliate GatorLink account for the external collaborator ##Name of Research Group or Project
    1 KB (177 words) - 18:41, 14 December 2018
  • OpenCL
    OpenCL™ (Open Computing Language) is a low-level API for heterogeneous computing that runs on GPUs. Using the OpenCL API, developers can launch compute kern If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (365 words) - 17:52, 19 August 2022
  • Data Science Platform
    ...des essential infrastructure, tools, and expertise to support data science research and accelerate impactful discoveries. All support requests and inqueries ar ...l computation, and large-scale optimization. TensorFlow also supports both research and production deployments.
    5 KB (669 words) - 17:22, 10 May 2024
  • Nvidia CUDA Toolkit
    ...elopers, scientists and researchers are finding broad-ranging uses for GPU computing with CUDA. If you publish research that uses {{#var:app}} you have to cite it as follows:
    4 KB (543 words) - 13:44, 20 November 2023
  • MKL
    Intel Math Kernel Library (Intel MKL) is a computing math library of highly optimized, extensively threaded math routines for ap ...ration with Microsoft Visual Studio*, Eclipse*, and XCode*. The Intel> MKL computing math library allows for full integration of the Intel Compatibility OpenMP*
    3 KB (378 words) - 19:14, 24 August 2022
  • Matlab add-ons
    Matlab add-ons are managed by the campus licensing group and not be Research Computing. Here's how to get the list of available add-ons.
    2 KB (206 words) - 14:11, 30 June 2017
  • Modules
    ...ing the ''modules'' system developed by Robert McLay at the Texas Advanced Computing Center [http://www.tacc.utexas.edu/home (TACC)] in order to ease the comple
    3 KB (428 words) - 18:21, 7 February 2023
  • Globus
    ...te, the University of Chicago and Argonne National Laboratory. UF Research Computing has deployed Globus as one mechanism to facilitate data transfer to and fro ...tions. One level defines a particular globus setup and is asociated with a computing resource such as a server, cluster, storage system, desktop, laptop, or oth
    11 KB (1,849 words) - 14:14, 31 January 2024
  • AI Education and Training
    ...tual content, our hope is to support learners who seek to begin applied AI research. ...es a variety of online education and training materials in AI, accelerated computing, and accelerated data science for developers, data science researchers, stu
    3 KB (463 words) - 21:43, 7 November 2022
  • JModelTest
    ...ing model-averaged tree topologies. jModelTest 2 includes High Performance Computing (HPC) capabilities and additional features like new strategies for tree opt ...The default is 8. Make sure your job script requests appropriate number of computing cores with the '#PBS -l nodes=1:ppn=X'.
    3 KB (431 words) - 19:27, 12 August 2022
  • Julia
    ...hnical computing, with syntax that is familiar to users of other technical computing environments. It provides a sophisticated compiler, distributed parallel ex If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (412 words) - 20:49, 21 October 2022
  • Training Videos
    === Introduction to Research Computing and HiPerGator=== ...or new users, this training provides a general overview of the UF Research Computing facilities and basic usage of HiPerGator. <br>
    13 KB (1,991 words) - 17:16, 15 February 2024
  • BEDTools
    ...BEDTools, one can develop sophisticated pipelines that answer complicated research questions by "streaming" several BEDTools together. The following are examp #Culling/refining/computing coverage for BAM alignments based on genome features.
    3 KB (485 words) - 12:48, 15 August 2022
  • TREEPUZZLE
    ...ethod to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence ali If you publish research that uses {{#var:app}} you have to cite it as follows:
    4 KB (450 words) - 19:31, 10 June 2022
  • Training
    Research Computing runs regular in-person training sessions throughout the year. These session In addition to the training sessions coordinated by UF Research Computing, we are aware of many training opportunities provided by other institutions
    3 KB (484 words) - 13:21, 10 January 2023
  • Healthcare and Life Sciences
    ...from past examples and make informed decisions in life sciences. Research Computing AI Support team will assist in developing and refining advanced models for ...ble genomics analysis software suite that leverages full-stack accelerated computing to process data in minutes. Compatible with all leading sequencing instrume
    4 KB (529 words) - 04:22, 10 May 2024
  • Getting Started
    Welcome to UF Research Computing! This page is intended to help new clients getting started on HiPerGator us ...Training]] course to familiarize themselves with using a supercomputer for research, save time, and avoid many beginner mistakes.
    4 KB (648 words) - 19:34, 22 April 2024
  • Galaxy
    ...benefits of the UF instance of Galaxy are access to the high-speed campus Research Network, use of large HPC cluster resources for running jobs, transparent u
    4 KB (562 words) - 18:05, 9 November 2022
  • INLA
    Description: Bayesian computing with INLA If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (236 words) - 12:20, 26 August 2022
  • ExaBayes
    ...ayes can handle is only limited by the combined main memory of your entire computing cluster. If you publish research that uses {{#var:app}} you have to cite it as follows:
    7 KB (886 words) - 21:12, 21 December 2022
  • FFTW
    Fastest Fourier Transform in the West, is a C library for computing the Discrete Fourier Transform (DFT) in one or more dimensions, of arbitrar If you publish research that uses {{#var:app}} you may want to cite it as follows:<br/><br/>
    2 KB (223 words) - 16:41, 15 August 2022
  • Vaspkit
    A user-friendly interface facilitating high-throughput computing and analysis using VASP code If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (239 words) - 19:51, 1 June 2022
  • Satsuma2
    ...rrelation based synteny aligner, (re)designed to make full use of parallel computing If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (243 words) - 18:10, 1 June 2022
  • Remote Support
    * There is no direct support for students using Research Computing resources for class work. See [https://www.rc.ufl.edu/get-support/classroom
    2 KB (370 words) - 14:31, 2 May 2024
  • QuartetScores
    Code for computing various support scores for internodes If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (258 words) - 14:50, 27 April 2020
  • RHash
    RHash is a console utility for computing and verifying hash sums of files. If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (249 words) - 21:49, 21 August 2022
  • Tivoli Backup
    ...h UF-IT's Tivoli backup group to provide backups of their data on Research Computing systems. ...overed from the Tivoli system, please submit a service request in Research Computing's ticketing system at [http://support.rc.ufl.edu http://support.rc.ufl.edu]
    7 KB (1,207 words) - 16:29, 10 January 2023
  • AMAS
    If you publish research that uses {{#var:app}} you have to cite it as follows: ...660/ Borowiec, M.L. 2016. AMAS: a fast tool for alignment manipulation and computing of summary statistics. PeerJ 4:e1660.]
    2 KB (250 words) - 12:38, 12 August 2022
  • QMCPACK
    ...n-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (259 words) - 21:24, 6 December 2019
  • ProSplign
    Splign is a utility for computing cDNA-to-Genomic, or spliced sequence alignments. At the heart of the progra If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (267 words) - 17:08, 1 June 2022
  • TAU
    |{{#vardefine:url|http://www.cs.uoregon.edu/Research/tau/home.php}} If you publish research that uses {{{app}}} you have to cite it as follows:
    4 KB (581 words) - 22:37, 24 October 2022
  • Xterm
    In computing, xterm is the standard terminal emulator for the X Window System. A user ca If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (278 words) - 19:37, 11 July 2022
  • Daemons
    The daemon server provides UF Research Computing users with the space and resources to run long-running processes that ''do
    2 KB (280 words) - 13:51, 25 March 2022
  • Proteinortho
    datasets and makes use of distributed computing techniques when run on If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (302 words) - 20:27, 12 August 2022
  • VS Code Remote Development
    If you don't mind staying on Research Computing's update schedule, you can put the following commands into the job script t This may become somewhat optional as Research Computing updates VS Code, but this does give you full control over the version to us
    7 KB (1,100 words) - 17:42, 5 March 2024
  • HPG Interfaces
    ...b-based framework for accessible, reproducible, and transparent biological computing. * '''NOTE''': Research Computing now uses Gatorlink Authentication for all passwords. Please use the UF Gato
    5 KB (823 words) - 19:37, 22 April 2024
  • Booster
    BOOSTER is a new way of computing bootstrap supports in large phylogenies. If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (283 words) - 21:11, 6 December 2019
  • GCT
    ...to provide community-based support for critical software packages for grid computing. The GCT is based on a fork of the Globus Toolkit but is not the Globus Too If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (290 words) - 13:54, 21 October 2022
  • Blitz
    Blitz++ is a C++ class library for scientific computing which provides performance on par with Fortran 77/90. It uses template tech If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (303 words) - 21:19, 6 December 2019
  • OpenBLAS
    In scientific computing, OpenBLAS is an open source implementation of the BLAS API with many hand-c If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (291 words) - 18:45, 2 June 2022
  • Web Application Hosting
    ...machine based web applications, APIs, and services for internal use by UF research groups or for collaborations. ...ing customers a competitive edge for top-tier research and presentation of research, with such needs as: significant computational and database resources and/o
    7 KB (1,084 words) - 15:43, 3 April 2024
  • Dtiprep
    ...nd motion check, head motion and Eddy current artifact correction, and DTI computing. If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (290 words) - 21:50, 27 August 2020
  • FEniCS
    FEniCS is a popular open-source (LGPLv3) computing platform for solving partial differential equations (PDEs). FEniCS enables If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (301 words) - 21:20, 6 December 2019
  • MGEScan
    ...EScan. Cloud image is available on Amazon Cloud (EC2) to utilize on-demand computing resources for data analysis. If you publish research that uses {{#var:app}} you have to cite it as follows:
    2 KB (299 words) - 16:58, 10 June 2022
  • HASLR
    ...the same sample. HASLR is capable of assembling large genomes on a single computing node. Our experiments show that it can assemble a CHM1 human dataset in les If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (315 words) - 19:53, 17 August 2020
  • Slurm-drmaa
    This software also enables the integration of QCG-Computing with the underlying SLURM system for remote multi-user job submission and c If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (316 words) - 14:30, 11 July 2023
  • SOAPec
    ...uency Kmers, the larger Kmer size, the better of this effect but need more computing resouce. In order to get an extreme high accuracy result, we balanced the t If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (322 words) - 17:14, 10 June 2022
  • BAPS
    Corander et al. (Statistics & Computing 2006). If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (313 words) - 18:07, 12 August 2022
  • NextDenovo
    ...no correction step for PacBio Hifi reads), but requires significantly less computing resources and storages. After assembly, the per-base accuracy is about 98-9 If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (312 words) - 18:03, 10 May 2021
  • Quickquartet
    This project contains the QuickQuartet algorithm for computing the all-to-all quartet distance for large evolutionary tree collections. By If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (317 words) - 21:02, 21 August 2022
  • MELTING
    If you publish research that uses {{#var:app}} you have to cite it as follows: Le Novère N. (2001). MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics, 17: 1226-12
    3 KB (306 words) - 19:50, 12 August 2022
  • Transfer Data with Globus
    ...below, shows settings for a transfer between ufrc#go and the FSU Research Computing endpoint fsurc#lustre ;Note: We'll call a Research Computing user ''RCUser'' for brevity. The sender or a receiver on the other name wil
    10 KB (1,541 words) - 20:03, 17 January 2023
  • P4est
    If you publish research that uses {{#var:app}} you have to cite it as follows: ...Refinement on Forests of Octrees. Published in SIAM Journal on Scientific Computing 33 no. 3 (2011), pages 1103-1133]
    3 KB (320 words) - 17:24, 10 June 2022
  • NpScarf
    ...es in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also fac If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (326 words) - 14:29, 4 September 2020
  • IGTP
    * Computing reconciliation costs If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (318 words) - 19:06, 12 August 2022
  • Silo
    disparate computing platforms. Consequently, Silo facilitates If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (356 words) - 17:28, 10 June 2022
  • OpenMPI
    ...xpertise, technologies, and resources from all across the High Performance Computing community in order to build the best MPI library available. Open MPI offers If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (337 words) - 19:02, 21 July 2023
  • Xwalk
    If you publish research that uses {{#var:app}} you have to cite it as follows: Kahraman A., Malmström L., Aebersold R. (2011). Xwalk: Computing and Visualizing Distances in Cross-linking Experiments. Bioinformatics, doi
    3 KB (345 words) - 16:47, 28 February 2023
  • ALLMAPS
    ...he accuracy of the resulting chromosomal assemblies. ALLMAPS is capable of computing a scaffold ordering that maximizes the colinearity to a collection of maps, If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (361 words) - 21:11, 6 December 2019
  • MPB
    MPB is a free and open-source software package for computing the band structures, or dispersion relations, and electromagnetic modes of If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (344 words) - 21:21, 6 December 2019
  • MasHmap
    MashMap implements a fast and approximate algorithm for computing local alignment boundaries between long DNA sequences. It can be useful for If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (359 words) - 17:28, 27 May 2022
  • PAPI
    ...ent towards alleviating commonly occurring bottlenecks in high performance computing. If you publish research that uses {{{app}}} you have to cite it as follows:
    3 KB (360 words) - 16:36, 21 August 2022
  • ADMIXTURE
    If you publish research that uses {{#var:app}} you have to cite it as follows: ...ating the convergence of iterative optimization algorithms. Statistics and Computing, 2009.]
    3 KB (366 words) - 20:51, 11 August 2022
  • NLP
    ...healthcare, it helps analyze medical records to aid patient care. Research Computing can help with language modeling for knowledge exploration, measurement, cla ...required for [https://github.com/NVIDIA/Megatron-LM Megatron-LM]. Research computing has pretrained, large parameter Megatron language models available to Hiper
    7 KB (989 words) - 19:51, 10 May 2024
  • Cowast
    ...model components representing different earth systems, such as the Weather Research and Forecasting (WRF) model, the Simulating Waves Nearshore (SWAN) model, ...on, and so on for other projects. Users decide the project and UF research computing provides the necessary expertise to carry out the tasks necessary to use CO
    3 KB (443 words) - 13:28, 27 March 2024
  • DAWGPAWS
    ...tion evidence tracks can be distributed across nodes in a high-performance computing environment providing a scalability that makes this a Pipeline to Annotate If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (381 words) - 21:20, 6 December 2019
  • New user training
    # Recognize the role of Research Computing, utilize HiPerGator as a research tool and select appropriate resource allocations for analyses ==Module 1: Introduction to Research Computing and HiPerGator==
    16 KB (2,450 words) - 15:00, 14 August 2023
  • Matlab
    ...lization, and numerical computation. Using MATLAB, you can solve technical computing problems faster than traditional programming languages, such as C, C++, and ...d analysis, and computational biology. MATLAB is the language of technical computing for a million engineers and scientists in industry and academia.
    9 KB (1,361 words) - 16:06, 28 November 2023
  • EXpress
    samples than other currently available tools greatly reducing computing If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (383 words) - 18:53, 12 August 2022
  • NWChem
    ...nal chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional wor If you publish research that uses {{#var:app}}, you may cite it as follows:
    3 KB (379 words) - 13:53, 6 June 2022
  • PhyloBayes
    If you publish research that uses {{#var: app}} you have to cite it as follows: Lartillot N, Philippe H (2006) Computing Bayes factors using thermodynamic integration. Syst Biol 55: 195–207.
    3 KB (375 words) - 20:20, 12 August 2022
  • Visit
    ...l (<101 core) desktop-sized projects to large (>105 core) leadership-class computing facility simulation campaigns. Users can quickly generate visualizations, a If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (403 words) - 14:47, 15 March 2024
  • FastTree
    If you publish research that uses {{#var:app}} you have to cite it as follows: Price, M.N., Dehal, P.S., and Arkin, A.P. (2009) FastTree: Computing Large Minimum-Evolution Trees with Profiles instead of a Distance Matrix. M
    3 KB (388 words) - 16:39, 15 August 2022
  • Stumpy
    ...s, automatically identify its corresponding nearest-neighbor (grey). After computing the matrix profile it can be used for a If you publish research that uses {{#var:app}} you have to cite it as follows:
    3 KB (430 words) - 15:16, 13 April 2023
  • UFRC Help and Documentation
    ...an class="plainlinks">[http://www.ufl.edu/ University of Florida] Research Computing Help and Documentation site. General information, announcements, and purcha ...eft: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SPECIFIC RESEARCH AREAS</h1>
    5 KB (656 words) - 14:10, 19 March 2024
  • Federated login
    For access via web interfaces, UF Research Computing has established federated authentication so that users can access HiPerGato
    4 KB (619 words) - 13:42, 26 June 2023
  • Phyluce
    UF Research Computing added a custom environment variable for Phyluce for researchers who need to If you publish research that uses {{#var:app}} you have to cite it as follows:
    4 KB (517 words) - 18:23, 21 August 2022
  • Computer Vision
    ...information from digital images, videos and other visual inputs. Research Computing AI support will help with building new and finetuning existing advanced mod *'''[[Detectron2|Detectron2]]''': Detectron2 is Facebook AI Research's next generation library that provides state-of-the-art detection and segm
    4 KB (563 words) - 20:59, 21 December 2022
  • Vasp
    ...ting does not have a license for VASP for HiPerGator users. The individual research groups acquire a license from the developers (see https://www.vasp.at/ for If you publish research that uses {{#var:app}} you have to cite it as follows:
    4 KB (538 words) - 22:38, 31 March 2024
  • Providing Access To Data
    ...and select 'Search For Groups'. Search for 'University of Florida Research Computing' and request to be added to the group. Once added, you will be able to inst
    4 KB (626 words) - 19:11, 24 January 2023
  • HLAminer
    ...HPTASR mines the alignments, scoring each possible HLA allele identified, computing and reporting an expect value (E-value) based on the chance of contigs char If you publish research that uses {{#var:app}} you have to cite it as follows:
    4 KB (541 words) - 14:55, 14 December 2022
  • BEAST
    * To limit the number of computing cores Beast will use for posterior computation to the number requested from If you publish research that uses {{{app}}} you have to cite it as follows:
    4 KB (553 words) - 14:27, 27 June 2023
  • Stata
    ...veryone to be able to use, please open a support request, and the Research Computing staff can add it to one of the /apps/stata/ directories.
    4 KB (621 words) - 15:23, 5 January 2023
  • Cron
    {{Note|All users wishing to make use of cron at Research Computing are highly encouraged to configure cron on the server [[Daemons|<code>daemo
    4 KB (661 words) - 19:04, 27 February 2023
  • Samba Access
    '''Research Computing only supports SMB versions >3.0.'''
    5 KB (816 words) - 17:31, 31 August 2023
  • HPG Computation
    ...age.''' This is a fast storage systems that can handle the I/O involved in research workloads. Before using <code>sbatch</code> or launching a workload interac ...use. It cannot handle the high-throughput requirements of high-performance computing workloads.
    5 KB (760 words) - 17:35, 22 April 2024
  • Slurm
    ...same way as personal desktops/laptops/workstations. The massive amount of computing power requires a sophisticated approach to scheduling workloads to make sur If you publish research that uses {{#var:app}} you have to cite it as follows:
    5 KB (763 words) - 17:37, 5 March 2024
  • Conda
    ...h velocity of changes in the popular ML/DL frameworks and packages and GPU computing exacerbates the problem. UF Research Computing Applications Team uses conda for many application installs behind the scene
    16 KB (2,392 words) - 20:14, 16 April 2024
  • How To ResVault
    ...the drive has been shared with the desired new owner, '''contact Research Computing support''' and request that drive ownership be transferred.
    6 KB (953 words) - 20:01, 18 July 2023
  • R
    R is a free software environment for statistical computing and graphics. If you publish research that uses {{{app}}} you have to cite it as follows:
    6 KB (981 words) - 20:45, 16 October 2023
  • RAxML
    ...eral, there are four different RAxML executables installed on the Research Computing systems. If you publish research that uses {{{app}}} you have to cite it as follows:
    7 KB (1,050 words) - 21:31, 21 August 2022
  • Gaussian
    ...ed by chemists, chemical engineers, biochemists, physicists and others for research in established and emerging areas of chemical interest. ...machine. You cannot run Gaussian across multiple machines on the Research Computing cluster.
    6 KB (918 words) - 14:39, 8 March 2023
  • CellProfiler
    ...ch processing mode, which is how it is intended to be used at the Research Computing. To run CellProfiler in batch mode, you should include the -c or --run-head If you publish research that uses {{#var:app}} you have to cite it as follows:
    8 KB (910 words) - 21:29, 21 December 2022
  • Account and QOS limits under SLURM
    ...essively harder or even impossible to achieve the shared goals of Research Computing and the UF Researcher Community stated above. See the [[Available Node Feat
    8 KB (1,354 words) - 18:36, 9 February 2024
  • Jupyter Notebooks
    UF Research Computing offers several methods to run Jupyter. This page provides general informati ...tion environment provided by [http://jupyter.org/ Jupyter] running on UFRC computing resources.
    18 KB (2,983 words) - 18:58, 23 March 2023
  • Spark
    Apache Spark is a fast and general-purpose cluster computing system. It provides high-level APIs in Java, Scala, Python and R, and an op If you publish research that uses {{#var:app}} you have to cite it as follows:
    11 KB (1,573 words) - 22:01, 15 December 2022
  • Storage
    UF Research Computing maintains several shared storage systems that are intended for different us In a fully collaborative research group on HiPerGator all members are encouraged to set <code>umask 007</code
    12 KB (2,046 words) - 15:26, 13 July 2023
Retrieved from "https://help.rc.ufl.edu/doc/Special:Search"