Search results

DealII
[[Category:Software]][[Category:Library]]

2 KB (250 words) - 19:56, 13 June 2022
Ensembl Tools
[[Category:Software]][[Category:Biology]][[Category:Biology]]

3 KB (333 words) - 18:52, 12 August 2022
Category:Material Science
[[Category:Software]]

5 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Yagcloser
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]]

2 KB (265 words) - 19:07, 1 April 2024
Quickquartet
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:02, 21 August 2022
HELEN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 22:22, 27 August 2020
Category:Software
Or you can browse through the sub-categories or software package names in the table below. To add a documentation page for a new piece of software installed into /apps please go to [[Add New App Page]].

2,146 members (62 subcategories, 0 files) - 19:53, 20 February 2024
TetGen
[[Category:Software]][[Category:Modeling]] |{{#vardefine:url|http://wias-berlin.de/software/tetgen}}

2 KB (253 words) - 16:28, 22 August 2022
TreeBreaker
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (271 words) - 21:29, 6 December 2019
Dram
[[Category:Software]]

3 KB (361 words) - 14:11, 21 October 2022
Annotated SLURM Script
* Load the software you need

3 KB (502 words) - 20:49, 13 May 2024
LDhat
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:09, 10 June 2022
Test
[[Category:Software]][[Category:shell]]

2 KB (229 words) - 21:29, 6 December 2019
Trilinos Configuration
[[Category:Software]]

2 KB (246 words) - 20:40, 21 June 2017
Mathematica
[[Category:Software]][[Category:Math]]

3 KB (315 words) - 22:21, 8 September 2020
TaxonKit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:01, 13 December 2021
RADICAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://desalle.amnh.org/software.html}}

2 KB (295 words) - 21:28, 21 August 2022
PhyloParser
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 18:17, 21 August 2022
SRA-Human-Scrubber
[[Category:Software]]

3 KB (411 words) - 14:01, 27 May 2022
Viromescan
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (236 words) - 18:36, 24 March 2023
IMa2p
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 21:21, 6 December 2019
LncScore
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:21, 6 December 2019
ATLAS
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}

3 KB (317 words) - 15:19, 12 August 2022
AtomMan
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 14:16, 22 September 2020
Freyja
[[Category:Software]][[Category:Phylogenetics]][[Category:Sequencing]][[Category:Biology]]

2 KB (289 words) - 16:49, 15 August 2022
OpenCL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 17:52, 19 August 2022
CRISPRCasFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 21:11, 6 December 2019
Ancestryhmm
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (291 words) - 21:25, 9 May 2023
SRA
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software}}

4 KB (601 words) - 19:10, 27 November 2023
NEURON
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

2 KB (249 words) - 14:58, 10 June 2022
Bzip2
[[Category:Software]][[Category:Utility]][[Category:Library]]

2 KB (289 words) - 13:16, 15 August 2022
SOAPdenovo
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (314 words) - 00:05, 22 August 2022
RNAstructure
[[Category:Software]]

3 KB (359 words) - 21:58, 21 August 2022
DISCOVAR de novo
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:url|https://software.broadinstitute.org/software/discovar/blog/?page_id=14}}

3 KB (326 words) - 14:41, 15 August 2022
ARPACK
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.caam.rice.edu/software/ARPACK/}}

2 KB (255 words) - 14:42, 12 August 2022
KING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] [http://people.virginia.edu/~wc9c/KING/manual.html Software Manual in HTML format]

3 KB (305 words) - 19:28, 12 August 2022
Minimap2
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
Open OnDemand
[[Category:Software]][[Category:GUI]]

7 KB (1,059 words) - 16:46, 5 May 2023
Scallop
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 14:44, 26 January 2021
Category:Genomics
[[Category:Biology]][[Category:Software]] Genomics Software

347 members (0 subcategories, 0 files) - 15:26, 23 August 2022
PCRE
[[Category:Software]][[Category:Programming]][[Category:library]] ...ar expression API. The PCRE library is free, even for building proprietary software.

3 KB (307 words) - 12:10, 26 August 2022
Pomoxis
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (285 words) - 18:48, 21 August 2022
Barrnap
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.barrnap.shtml}}

3 KB (328 words) - 17:55, 10 June 2022
DSSAT
[[Category:Software]] is a software application program that comprises crop simulation

3 KB (371 words) - 14:52, 15 August 2022
PyVCF
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (236 words) - 20:08, 21 August 2022
Category:GPU
[[Category:Software]]

11 members (1 subcategory, 0 files) - 18:36, 6 June 2022
SUNDIALS
[[Category:Software]][[Category:Math]] ...Differential/Algebraic Equation Solvers," ACM Transactions on Mathematical Software, 31(3), pp. 363-396, 2005. Also available as LLNL technical report UCRL-JP-

3 KB (364 words) - 15:25, 19 August 2022
DSuite
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (244 words) - 17:17, 2 June 2022
Pplacer
[[Category:Software]]

2 KB (282 words) - 15:45, 19 August 2022
Nsightsys
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

2 KB (278 words) - 20:39, 24 August 2022
NCBI BLAST+
[[Category:Software]][[Category:biology]]

3 KB (344 words) - 19:55, 12 August 2022
GEMMA
[[Category:Software]][[Category:Phylogenetics]] GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related mode

2 KB (279 words) - 21:21, 6 December 2019
SEQPower
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Phylogenetics]]

2 KB (274 words) - 22:38, 21 August 2022
GenSel
[[Category:Software]][[Category:Genomics]]

2 KB (271 words) - 17:03, 15 August 2022
Category:Math
[[Category:Software]]

64 members (1 subcategory, 0 files) - 21:45, 24 October 2022
Cupy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 19:58, 23 May 2022
Esmf
[[Category:Software]][[Category:geospatial]] The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeli

2 KB (256 words) - 20:59, 22 September 2022
BRM
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:54, 26 August 2020
GCE
[[Category:Software]]

3 KB (311 words) - 18:57, 12 August 2022
ClustalW
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (265 words) - 18:37, 12 August 2022
MPB
[[Category:Software]][[Category:Library]][[Category:Math]] MPB is a free and open-source software package for computing the band structures, or dispersion relations, and ele

3 KB (344 words) - 21:21, 6 December 2019
Gephi
[[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.

3 KB (337 words) - 17:42, 11 January 2023
Bam-Readcount
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 15:11, 10 June 2022
Python Modules
[[Category:Software]]

415 bytes (50 words) - 20:40, 5 April 2018
VMD
[[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] If 3D visualization is required you will need to run this software on a HWGUI partition.

3 KB (384 words) - 17:33, 22 August 2022
Ydata-profiling
[[Category:Software]][[Category:Machine Learning]][[Category:Artificial Intelligence]]

2 KB (280 words) - 19:05, 1 December 2023
PIA2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 21:22, 6 December 2019
Epiteome
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 15:06, 15 August 2022
NLP
[[Category:Software]][[Category:Machine Learning]][[Category:Data Science]][[Category:Help]] This page describes the collection of Natural language processing software on HiperGator. Natural Language Processing (NLP) is a part of artificial in

8 KB (1,126 words) - 19:55, 14 May 2024
HaMStR
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (420 words) - 20:09, 12 August 2022
IAnnotateSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Ge

3 KB (330 words) - 21:21, 6 December 2019
Mapdamage
[[Category:Software]][[Category:Sequencing]][[Category:Biology]][[Category:NGS]]

3 KB (299 words) - 21:28, 16 September 2022
Quake
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://www.cbcb.umd.edu/software/quake/}}

3 KB (367 words) - 18:50, 10 June 2022
Merlin
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (264 words) - 12:56, 15 August 2022
Bioawk
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 12:54, 15 August 2022
Healthcare and Life Sciences
...e potential to revolutionize human health and medical research by enabling software to learn from past examples and make informed decisions in life sciences. R ...ct protein structures with remarkable accuracy, down to atomic levels. The software constructs an initial model, iteratively refines it, and produces a 3D mode

4 KB (521 words) - 16:00, 14 May 2024
Jellyfish
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 19:27, 12 August 2022
BEAST2-XML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 14:20, 2 September 2020
Physher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 15:28, 16 November 2021
FragGeneScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (232 words) - 16:48, 15 August 2022
Multimatch-gaze
[[Category:Software]][[Category:Math]][[Category:Data_Science]]

3 KB (318 words) - 19:07, 16 May 2023
Category:Animation
[[Category:Software]]

3 members (0 subcategories, 0 files) - 16:17, 3 June 2022
Xlsx2csv
[[Category:Software]]

2 KB (241 words) - 20:08, 24 October 2022
Category:Geospatial
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:20, 7 July 2017
Sparsehash
[[Category:Software]][[Category:web]][[Category:programming]]

3 KB (322 words) - 18:02, 15 August 2022
ParaView
[[Category:Software]][[Category:Data Science]]

3 KB (416 words) - 21:28, 13 October 2023
MIKE
[[Category:Software]][[Category:Modeling]][[Category:Geospatial]][[Category:Fluid Dynamics]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w

2 KB (259 words) - 20:26, 24 August 2022
SCOP
[[Category:Software]]

2 KB (295 words) - 17:31, 15 August 2022
MASS
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b

2 KB (269 words) - 19:02, 10 October 2022
SExtractor
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}

2 KB (281 words) - 21:24, 6 December 2019
Aster
[[Category:Software]]

2 KB (267 words) - 17:50, 28 August 2023
Template:App Main
<noinclude>[[Category:Templates]]</noinclude><includeonly>[[Category:Software]]</includeonly>

2 KB (229 words) - 20:58, 6 December 2019
Category:Structure
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:32, 6 June 2022
Rainbow
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (254 words) - 21:24, 6 December 2019
Magicblast
[[Category:Software]]

2 KB (304 words) - 16:29, 6 October 2022
Lbzip
[[Category:Software]][[Category:Compression]]

2 KB (274 words) - 14:23, 27 May 2022
Moni
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (341 words) - 13:31, 15 August 2022
Photutils
[[Category:Software]][[Category:Astronomy]]

2 KB (271 words) - 13:11, 6 June 2022
CloudCompare
[[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo

3 KB (314 words) - 18:20, 27 January 2020
DeTiN
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (249 words) - 14:39, 15 August 2022

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