Search results

Page title matches

• Category:Visualization
  Tools for data visualization.
  19 members (0 subcategories, 0 files) - 14:53, 19 August 2022

Page text matches

• Category:Visualization
  Tools for data visualization.
  19 members (0 subcategories, 0 files) - 14:53, 19 August 2022
• VTK
  ..., contouring, and Delaunay triangulation. VTK has an extensive information visualization framework, has a suite of 3D interaction widgets, supports parallel process
  3 KB (360 words) - 20:55, 12 August 2022
• ViewBS
  ...level commands can be divided into two parts: methylation report and data visualization of functional regions. The part of visualization for functional regions also has several different top commands. For ViewBS,
  3 KB (384 words) - 17:30, 22 August 2022
• Ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples ...himi: Sashimi plot revised for browser-and annotation-independent splicing visualization. PLoS computational biology, 14(8), e1006360.]
  2 KB (275 words) - 16:38, 27 May 2022
• Eddy-squeeze
  [[Category:Visualization]] ...he signal replacements by FSL Eddy with --repol option. In addition to the visualization, it also collects measures like motions, number of outliers and post-eddy t
  2 KB (280 words) - 14:12, 21 October 2022
• GraphViz
  Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract gra
  2 KB (276 words) - 19:03, 12 August 2022
• ETE3
  ...gy and paralogy detection. In addition, ETE implements an interactive tree visualization system as well as a highly customizable tree drawing engine to create PDF a ...content/early/2016/03/21/molbev.msw046 ETE 3: Reconstruction, analysis and visualization of phylogenomic data. Jaime Huerta-Cepas, Francois Serra and Peer Bork. Mol
  3 KB (400 words) - 19:13, 10 June 2022
• VMD
  [[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] VMD is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid
  3 KB (384 words) - 17:33, 22 August 2022
• Visit
  [[Category:Software]][[Category:Visualization]][[Category:Animation]] ...ting images and animations for presentations. VisIt contains a rich set of visualization features to enable users to view a wide variety of data including scalar an
  3 KB (403 words) - 14:47, 15 March 2024
• Intervene
  Intervene: a tool for intersection and visualization of multiple genomic region and gene sets http://intervene.rtfd.io/ ...859-017-1708-7 Khan A, Mathelier A. Intervene: a tool for intersection and visualization of multiple gene or genomic region sets. BMC Bioinformatics. 2017;18:287. d
  3 KB (295 words) - 21:21, 6 December 2019
• Chimera
  UCSF Chimera is a highly extensible program for interactive visualization Chimera is developed by the Resource for Biocomputing, Visualization, and
  3 KB (296 words) - 18:27, 12 August 2022
• PacMAP
  ...d Approximation) is a dimensionality reduction method that can be used for visualization, preserving both local and global structure of the data in original space. ...Empirical Approach to Deciphering t-SNE, UMAP, TriMap, and PaCMAP for Data Visualization. Journal of Machine Learning Research. 2021. 22. 201. 1-73. http://jmlr.org
  3 KB (304 words) - 18:24, 11 February 2023
• Computer Vision
  = Modules for Visualization Toolkit = ...ic visualization. It has a client–server architecture to facilitate remote visualization of datasets, and generates level of detail models to maintain interactive f
  4 KB (563 words) - 20:59, 21 December 2022
• Circleator
  The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool developed at the Institute for Genome Sciences in the University of Ma ..., Myers, G.S., Rasko, D.A., White, O. (2014) Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG. Bioinformatics, 10.1093/bio
  3 KB (319 words) - 21:18, 6 December 2019
• Cytoscape
  ...ution provides a basic set of features for data integration, analysis, and visualization.
  3 KB (334 words) - 14:23, 15 August 2022
• PyVista
  ...age provides a Pythonic, well-documented interface exposing VTK’s powerful visualization backend to facilitate rapid prototyping, analysis, and visual integration o
  3 KB (344 words) - 13:56, 25 September 2020
• Gephi
  [[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.
  3 KB (337 words) - 17:42, 11 January 2023
• Ferret
  [[Category:Software]][[Category: Geospatial]][[Category:Climate]][[Category:Visualization]][[Category:Data Science]] Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and m
  3 KB (359 words) - 20:26, 24 August 2022
• AFNI
  RW Cox. AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages. Computers and Biomedical Rese RW Cox and JS Hyde. Software tools for analysis and visualization of FMRI Data. NMR in Biomedicine, 10:171-178, 1997.
  3 KB (363 words) - 20:52, 11 August 2022
• Artemis
  Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Artemis: sequence visualization and annotation.
  3 KB (378 words) - 14:53, 12 August 2022
• Whiteboxtools
  ...kage; instead it is meant to serve as an analytical backend for other data visualization software, mainly GIS.
  3 KB (408 words) - 17:43, 22 August 2022
• P4vasp
  [[Category:Software]][[Category:Visualization]]
  2 KB (230 words) - 18:01, 19 August 2022
• Anvio
  Anvio is an analysis and visualization platform for ‘omics data.
  2 KB (237 words) - 14:20, 12 August 2022
• VARI
  [[Category:Software]][[Category:math]][[Category:visualization]]
  2 KB (248 words) - 14:10, 11 October 2022
• Bamsnap
  BamSnap: a lightweight command-based visualization tool for sequencing reads in BAM files
  2 KB (248 words) - 16:14, 27 May 2022
• Simulia
  [[Category:Software]][[Category:Simulation]][[Category:Visualization]]
  2 KB (252 words) - 18:23, 1 June 2022
• MAGeCK-VISPR
  MAGeCK-VISPR is a comprehensive quality control, analysis and visualization pipeline for CRISPR/Cas9 screens build on top of MAGeCK and VISPR.
  2 KB (251 words) - 20:21, 26 May 2022
• Squigglekit
  [[Category:Software]][[Category:Visualization]][[Category:Biology]]
  2 KB (254 words) - 15:55, 22 August 2022
• Data Science Platform
  ...ite of tools and packages for data manipulation, statistical modeling, and visualization, making it ideal for tasks ranging from simple data analysis to complex pre ...ts robust capabilities in numerical and matrix calculations, advanced data visualization, and the development of algorithms. It is particularly useful for applicati
  5 KB (669 words) - 17:22, 10 May 2024
• FFmpeg
  [[Category:Software]][[Category:Audio]][[Category:Visualization]]
  2 KB (252 words) - 16:41, 15 August 2022
• Schrodinger Suite
  ...m small molecule modelling to advanced pharmaceutical research, as well as visualization and automation tools.
  2 KB (257 words) - 15:30, 19 August 2022
• GATE
  ...validated physics models, sophisticated geometry description, and powerful visualization and 3D rendering tools with original features specific to emission tomograp
  2 KB (264 words) - 19:51, 10 June 2022
• TAU
  ...nt traces that can be displayed with the Vampir, Paraver or JumpShot trace visualization tools.
  4 KB (581 words) - 22:37, 24 October 2022
• VISPR
  VISPR - A visualization framework for CRISPR data.
  2 KB (261 words) - 15:53, 21 June 2023
• TPP
  ...s-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to our open mzXML format.
  2 KB (266 words) - 20:22, 24 August 2022
• Trgt
  ...ylation of each analyzed repeat. TRGT comes with a companion tool TRVZ for visualization of reads overlapping the repeats.
  2 KB (273 words) - 14:45, 28 July 2023
• Trvz
  TRVZ is a companion tool with TRGT for visualization of reads overlapping the repeats. TRGT is a tool for targeted genotyping of
  2 KB (273 words) - 14:46, 28 July 2023
• Sc-im
  [[Category:Software]][[Category:Visualization]][[Category:Utility]]
  2 KB (272 words) - 22:07, 21 August 2022
• IGV
  The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It
  2 KB (276 words) - 18:42, 15 August 2022
• Mosaic
  ...y and tertiary analysis. Its core idea is to allow convenient handling and visualization of single-cell data to enable exploratory analysis.
  2 KB (282 words) - 14:15, 14 October 2021
• Pplacer
  ...fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis.
  2 KB (282 words) - 15:45, 19 August 2022
• Pggb
  ...ariation. Maintaining local linearity is important for the interpretation, visualization, and reuse of pangenome variation graphs.
  2 KB (287 words) - 19:56, 6 November 2020
• Textract
  ...called “dark data”—that would be valuable for further textual analysis and visualization. While several packages exist for extracting content from each of these for
  3 KB (304 words) - 13:55, 21 October 2022
• Processing
  [[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Visualization]]
  2 KB (285 words) - 12:12, 26 August 2022
• Workbench
  ...n user interface for model creation, review, execution, output review, and visualization for integrated codes.
  2 KB (286 words) - 15:34, 19 August 2022
• Fit-sne
  ...ing (t-SNE) is a highly successful method for dimensionality reduction and visualization of high dimensional datasets. A popular implementation of t-SNE uses the Ba
  2 KB (287 words) - 16:34, 27 May 2022
• Imaginaire
  [[Category:Visualization]]
  3 KB (302 words) - 17:55, 15 August 2022
• Asap
  [[Category:Software]][[Category:Visualization]][[Category:Biology]]
  3 KB (295 words) - 17:29, 9 June 2022
• CViT
  [https://www.hindawi.com/journals/ijpg/2011/373875/ Chromosome Visualization Tool: A Whole Genome Viewer]
  2 KB (294 words) - 12:09, 26 August 2022
• DiscoVista
  DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic disco
  3 KB (291 words) - 19:00, 28 January 2020
• SVDetect
  ...s with both clustering and sliding-window strategies, and helping in their visualization at the genome scale.
  3 KB (303 words) - 20:46, 12 August 2022
• XCrySDen
  XCrySDen is a crystalline and molecular structure visualization program aiming at display of isosurfaces and contours, which can be superim
  2 KB (282 words) - 17:47, 22 August 2022
• Mmaction2
  [[Category:Software]][[Category:Machine Learning]][[Category:Visualization]]
  2 KB (277 words) - 19:16, 6 June 2023
• Parsnp
  ...gen TJ*, Ondov BD*, Koren S, Phillippy AM: Rapid Core-Genome Alignment and Visualization for Thousands of Microbial Genomes.]
  3 KB (297 words) - 21:22, 6 December 2019
• Export2graphlan
  [[Category:visualization]]
  3 KB (314 words) - 15:12, 15 August 2022
• Orange3
  Orange is a component-based data mining software. It includes a range of data visualization, exploration, preprocessing and modeling techniques. It can be used through
  3 KB (309 words) - 17:08, 10 June 2022
• CloudCompare
  [[Category:Software]][[Category:Visualization]]
  3 KB (314 words) - 18:20, 27 January 2020
• Ncview
  [[Category:Software]][[Category:Visualization]]
  2 KB (317 words) - 14:42, 19 August 2022
• DS9
  SAOImage DS9 is an astronomical imaging and data visualization application. DS9 supports FITS images and binary tables, multiple frame buf
  3 KB (322 words) - 13:07, 6 June 2022
• Spruceup
  ...ss.01635 Borowiec, M.L. (2019) Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments. Journal o
  3 KB (317 words) - 21:24, 6 December 2019
• MountainSort
  ...logy. It is part of MountainLab, a general framework for data analysis and visualization.
  3 KB (309 words) - 21:22, 6 December 2019
• Freesurfer
  ...a completely separate software from Freesurfer and is used purely for data visualization. Freesurfer 6 includes Freeview 2.0.
  3 KB (323 words) - 20:09, 12 August 2022
• Reference Indexes
  We also stage a chromosome build for the Galaxy's visualization tools when possible.
  2 KB (361 words) - 20:30, 12 August 2022
• Mothur
  ...a. mothur offers the ability to go from raw sequences to the generation of visualization tools to describe α and β diversity.
  3 KB (321 words) - 12:00, 19 August 2022
• VAMPIR
  The combined handling and visualization of instrumented and sampled event traces generated by Score-P enables an ou
  3 KB (321 words) - 17:22, 22 August 2022
• NCL
  ...erpreted language designed specifically for scientific data processing and visualization.
  3 KB (329 words) - 20:05, 24 August 2022
• Bamm
  ...015). BAMM is a command line program written in C++. Post-run analysis and visualization is performed using the R package BAMMtools.
  3 KB (322 words) - 18:00, 12 August 2022
• CARTA
  ...performance storage, while processed products are sent to clients only for visualization with modern web features, such as GPU-accelerated rendering. This architect
  3 KB (327 words) - 19:15, 23 May 2022
• Ovito
  * automate simulation post-processing, visualization, and data analysis tasks,
  3 KB (333 words) - 15:29, 1 December 2023
• IGTP
  * Providing three-dimensional tree visualization
  3 KB (318 words) - 19:06, 12 August 2022
• Silo
  is the VisIt visualization tool.
  3 KB (356 words) - 17:28, 10 June 2022
• Octave
  ...cal experiments. It also provides extensive graphics capabilities for data visualization and manipulation. Octave is normally used through its interactive command l
  2 KB (333 words) - 15:22, 19 August 2022
• Plink
  ...ration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.
  3 KB (342 words) - 20:25, 12 August 2022
• GUAVA
  GUAVA is a standalone GUI tool for the processing, analysis, and visualization of ATAC-seq data from raw sequencing reads to ATAC-seq signals. GUAVA can c
  3 KB (351 words) - 21:20, 6 December 2019
• CASAVA
  ...encing and counting studies and places the data in a compact structure for visualization within GenomeStudio Software or publicly available analysis tools. CASAVA c
  3 KB (340 words) - 18:23, 12 August 2022
• MGLTools
  [[Category:Visualization]]
  3 KB (357 words) - 17:03, 6 June 2022
• Vray
  ...render high-quality 3D visualizations. It is widely used in architectural visualization, advertising, and visual effects for film and television.
  3 KB (341 words) - 16:46, 6 April 2023
• SCIrun
  SCIRun is a Problem Solving Environment (PSE), for modeling, simulation and visualization of scientific problems. SCIRun now includes the biomedical components forma
  3 KB (344 words) - 22:09, 21 August 2022
• GrADS
  ...n interactive desktop tool that is used for easy access, manipulation, and visualization of earth science data. GrADS has two data models for handling gridded and s
  3 KB (334 words) - 20:26, 24 August 2022
• ROOT
  ...dimensions, curve fitting, function evaluation, minimization, graphics and visualization classes to allow the easy setup of an analysis system that can query and pr
  3 KB (358 words) - 16:48, 21 August 2022
• Spyder
  ...he data exploration, interactive execution, deep inspection, and beautiful visualization capabilities of a scientific package.
  3 KB (350 words) - 18:56, 21 August 2022
• PosiGene
  ...branches, (iii) can be used in arbitrary species contexts and (iv) offers visualization of the candidates. As data input the program requires only the coding seque
  3 KB (358 words) - 21:22, 6 December 2019
• READemption
  ...xpression quantification, differential gene expression analysis as well as visualization. In order to set up and perform analyses quickly READemption follows the pr
  3 KB (352 words) - 17:58, 1 June 2022
• PanX
  panX is a software package for pan-genome analysis, interactive visualization and exploration. The analysis pipeline is based on DIAMOND (Buchfink et al.
  3 KB (346 words) - 21:22, 6 December 2019
• Slicer
  Slicer or 3D Slicer is a free, open-source software for visualization, processing, segmentation, registration, and analysis of medical, biomedica
  3 KB (346 words) - 15:42, 8 April 2024
• Jutils
  Jutils is a visualization toolkit for alternative splicing events. It uses an intermediate tab separa
  3 KB (345 words) - 13:30, 15 August 2022
• Mvftools
  ...on utilities, filtering and transformation programs, and data analysis and visualization modules. MVF format is designed specifically for biological data analysis,
  3 KB (370 words) - 13:58, 30 April 2020
• BiG-SCAPE
  ...ut, BiG-SCAPE generates tab-delimited output files, as well as a rich HTML visualization that includes multi-locus phylogenies of each Gene Cluster Family made usin
  3 KB (377 words) - 12:53, 15 August 2022
• AtomEye
  AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed gra
  3 KB (351 words) - 15:21, 12 August 2022
• TASSEL
  ...pal component analysis, cluster analysis, missing data imputation and data visualization.  TASSEL development has been led by a group focused on maize genetics and
  3 KB (386 words) - 16:13, 22 August 2022
• MetaWRAP
  ...metagenomic analysis from start to finish: read quality control, assembly, visualization, taxonomic profiling, extracting draft genomes (binning), and functional an
  3 KB (412 words) - 22:31, 8 September 2020
• MZMine
  MZmine 2 is an open-source framework for processing, visualization and analysis of mass spectrometry based molecular profile data. It is based
  3 KB (417 words) - 13:28, 7 July 2023
• GenomicTools
  ...he GenomicTools platform supports the widely used BED format to facilitate visualization as well as integration with existing platforms and pipelines such as Galaxy
  3 KB (385 words) - 18:58, 12 August 2022
• ParaView
  ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze the
  3 KB (416 words) - 21:28, 13 October 2023
• RSEM
  ...ior mean and 95% credibility interval estimates for expression levels. For visualization, It can generate BAM and Wiggle files in both transcript-coordinate and gen
  3 KB (390 words) - 21:59, 21 August 2022
• Geant4
  ...n: geometry, tracking, detector response, run, event and track management, visualization and user interface. The multi-disciplinary nature of the toolkit requires t
  3 KB (416 words) - 19:34, 30 November 2022
• AltAnalyze
  ...ction analysis (protein, domain and microRNA targeting). Multiple advanced visualization tools and à la carte analysis methods are supported in AltAnalyze (e.g., n
  3 KB (398 words) - 19:14, 10 June 2022
• IMOD
  ...mod/paper/ Kremer J.R., D.N. Mastronarde and J.R. McIntosh (1996) Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116:71-76.]
  3 KB (414 words) - 14:42, 14 December 2022
• ZEO++
  *File format conversion and visualization aids
  3 KB (424 words) - 19:47, 27 May 2022
• QIIME2
  ...esentative sequences of OTUs, and through downstream statistical analysis, visualization, and production of publication-quality graphics. QIIME has been applied to
  3 KB (435 words) - 15:15, 19 August 2022

View (previous 100 | next 100) (20 | 50 | 100 | 250 | 500)