Search results

• SMC++
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]] ...J. Terhorst, J. A. Kamm, and Y. S. Song. Robust and scalable inference of population history from hundreds of unphased whole genomes. Nature Genetics, 49(2):303
  2 KB (268 words) - 23:52, 21 August 2022
• GroopM
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] extract population genomes from multi-sample metagenomic datasets.
  2 KB (263 words) - 21:20, 6 December 2019
• SNAPE-pooled
  [[Category:Software]][[Category:Biology]][[Category:Variant Calling]] ...robability distribution for the frequency of the minor allele in a certain population, at a certain position in the genome. If this probability is high enough, t
  2 KB (270 words) - 12:56, 15 August 2022
• MASS
  [[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] ...accurate brain extraction, applicable for both individual as well as large population studies.
  2 KB (269 words) - 19:02, 10 October 2022
• IMa2p
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...on of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under the IM (Isolation with Migration) model. Please refer to S
  2 KB (277 words) - 21:21, 6 December 2019
• Sniffles2
  [[Category:Biology]] ...-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data.
  2 KB (291 words) - 20:42, 12 August 2022
• DIYABC
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] A user-friendly approach to Approximate Bayesian Computation for inference on population history using molecular markers
  2 KB (300 words) - 14:41, 15 August 2022
• SNeP
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories estimation through Linkage Disequilibrium (LD). Calc
  2 KB (278 words) - 16:23, 10 June 2022
• Seekdeep
  [[Category:Biology]] ...encing data for haplotype frequency estimation for multiple samples from a population.
  2 KB (281 words) - 17:03, 24 July 2023
• Monolix
  [[Category:Software]][[Category:Modeling]][[Category:Biology]] ...ven for complex PK/PD models. Monolix is used for preclinical and clinical population PK/PD modeling and for Systems Pharmacology.
  2 KB (287 words) - 11:57, 19 August 2022
• Package-GFE
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...al high-throughput sequencing data for multiple diploid individuals from a population by a maximum-likelihood (ML) method.
  2 KB (280 words) - 16:45, 10 June 2022
• TESS
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Math]] TESS implements a Bayesian clustering algorithm for spatial population genetic analyses. It can perform both individual geographical assignment an
  3 KB (296 words) - 16:26, 22 August 2022
• BPP
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...g (2003), Burgess & Yang (2008), and Yang & Rannala (2010), for estimating population sizes (theta), species divergence times (tau), and for delimiting species u
  2 KB (294 words) - 18:21, 12 August 2022
• Hapbin
  [[Category:Biology]] Cross Population Extended Haplotype Homozogysity (XP-EHH) statistic.
  3 KB (292 words) - 18:12, 15 August 2022
• Popoolation
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...pproach for chromosomes or for set of genes. One of the main challenges in population genomics is to identify regions of intererest on a genome wide scale. We be
  3 KB (321 words) - 21:23, 6 December 2019
• LDhat
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...en in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.
  2 KB (296 words) - 17:09, 10 June 2022
• Momi
  [[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] ...the expected sample frequency spectrum (SFS), a statistic commonly used in population genetics, and uses it to fit demographic history.
  3 KB (305 words) - 19:03, 4 April 2022
• KING
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...of KING include family relationship inference and pedigree error checking, population substructure identification, forensics, gene mapping, etc.
  3 KB (305 words) - 19:28, 12 August 2022
• BAPS
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] to the population genetics context.
  3 KB (313 words) - 18:07, 12 August 2022
• Structure
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] inferring population structure using genotype data consisting of unlinked
  2 KB (325 words) - 16:03, 22 August 2022

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