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Platanus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 21:23, 6 December 2019
Sim4
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (302 words) - 20:41, 12 August 2022
FASTphase
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://stephenslab.uchicago.edu/software.html#fastphase}}

2 KB (282 words) - 21:59, 27 August 2020
Protobuf
[[Category:Software]][[Category:web]][[Category:library]]

2 KB (280 words) - 18:02, 15 August 2022
Tesseract
[[Category:Software]]

2 KB (271 words) - 17:29, 3 April 2024
PAUP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PAUP is a software package for inference of evolutionary trees.

2 KB (249 words) - 20:15, 12 August 2022
Anchorwave
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (367 words) - 21:10, 20 September 2023
GNU Compiler Collection
[[Category:Software]][[Category:Compiler]] ...for the GNU operating system. The GNU system was developed to be 100% free software, free in the sense that it respects the user's freedom.

2 KB (298 words) - 20:44, 15 August 2022
Category:Software
Or you can browse through the sub-categories or software package names in the table below. To add a documentation page for a new piece of software installed into /apps please go to [[Add New App Page]].

2,146 members (62 subcategories, 0 files) - 19:53, 20 February 2024
Autodock-vina
[[Category:Software]]

3 KB (343 words) - 19:31, 9 November 2022
OrthoMCL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

5 KB (748 words) - 22:40, 28 January 2024
Physher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 15:28, 16 November 2021
HDF5
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:exe|}} 

2 KB (326 words) - 18:16, 15 August 2022
Fgbio
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:20, 6 December 2019
REDItools2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 18:05, 1 June 2022
Umi-tools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 14:46, 4 September 2020
FRAMA
[[Category:Software]][[Category:biology]]

2 KB (236 words) - 21:21, 6 December 2019
Lumpy
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (235 words) - 19:46, 12 August 2022
Asteroid
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (380 words) - 16:32, 1 February 2023
SCOP
[[Category:Software]]

2 KB (295 words) - 17:31, 15 August 2022
Category:NGS
[[Category:Biology]][[Category:Software]][[Category:Research]] Next Generation Sequencing Software and Documentation

209 members (2 subcategories, 0 files) - 21:43, 24 October 2022
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
Opennmt-py
[[Category:Software]][[Category:Language]][[Category:Machine_Learning]]

2 KB (272 words) - 20:14, 6 April 2023
Parabricks
[[Category:Software]][[Category:Phylogenetics]] ...ardefine:url|https://www.nvidia.com/en-us/docs/parabricks/quickstart-guide/software-overview/}}

4 KB (574 words) - 21:25, 14 December 2022
Get homologues
[[Category:Software]][[Category:Biology]][[Category:Genomics]] An open-source software package that builds on popular orthology-calling approaches making highly c

3 KB (306 words) - 21:20, 6 December 2019
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
IDR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 15:50, 12 December 2019
CMS
[[Category:Software]][[Category:Biology]]

3 KB (317 words) - 21:02, 6 December 2019
Moni
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (341 words) - 13:31, 15 August 2022
Git-filter-repo
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 18:47, 3 June 2022
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
MMvec
[[Category:Software]][[Category:Chemistry]]

2 KB (238 words) - 20:51, 18 August 2022
DoGFinder
[[Category:Software]][[Category:Phylogenetics]] DoGFinder software is a package that identifies DoGs and quantifies their expression levels, f

2 KB (252 words) - 21:58, 3 November 2020
Infernal
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (305 words) - 19:31, 24 August 2022
HTMLDoc
[[Category:Software]][[Category:Documentation]][[Category:Web]]

2 KB (253 words) - 18:34, 15 August 2022
MHCflurry
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 16:07, 21 February 2020
Wise
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (321 words) - 21:29, 6 December 2019
Minimap2
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
Augustus
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (417 words) - 15:23, 12 August 2022
Meta-Marc
[[Category:Software]][[Category:Phylogenetics]] ...is not intended to be used as a final annotation or all-in-one tool; this software simply offers the user another view of complex metagenomic data. Users are

3 KB (336 words) - 14:51, 20 January 2021
CLUMPP
[[Category:Software]][[Category:Biology]] You must have configuration files to be able to run this software. The example configuration file can be copied using the following command:

3 KB (351 words) - 18:33, 12 August 2022
SplAdder
[[Category:Software]][[Category:Phylogenetics]] ...lternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized format

3 KB (304 words) - 15:50, 22 August 2022
MetaBAT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 21:21, 6 December 2019
SNeP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) traj

2 KB (278 words) - 16:23, 10 June 2022
Dlib
[[Category:Software]][[Category:Phylogenetics]] ...lkit containing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. See http://dlib.net for the main proje

2 KB (269 words) - 13:11, 4 May 2020
Category:Web
[[Category:Software]]

11 members (1 subcategory, 0 files) - 19:51, 22 August 2022
Category:GPU
[[Category:Software]]

11 members (1 subcategory, 0 files) - 18:36, 6 June 2022
Satsuma
[[Category:Software]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
MELD
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

3 KB (318 words) - 18:35, 18 August 2022
LIQA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 20:03, 15 August 2022

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