Search results

• Artemis
  Bioinformatics (Oxford, England) 2012;28;4;464-9 PUBMED: 22199388; PMC: 3278759; DOI: 10.1093/bioinformatics/btr703
  3 KB (378 words) - 14:53, 12 August 2022
• BESST
  ...vestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222] ...(2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281]
  3 KB (332 words) - 12:51, 15 August 2022
• Csvtk
  ...informatics, CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics and data science.
  2 KB (260 words) - 18:44, 12 August 2022
• Minimap2
  ...gnment for nucleotide sequences. Bioinformatics, 34:3094-3100. doi:10.1093/bioinformatics/bty191
  2 KB (260 words) - 13:31, 15 August 2022
• MultiQC
  ...QC is a tool to create a single report with interactive plots for multiple bioinformatics analyses across many samples. ...single report Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller Bioinformatics (2016)]
  2 KB (285 words) - 19:54, 12 August 2022
• Lambda
  ...Singer, Knut Reinert; Bioinformatics 2014 30 (17): i349-i355; doi: 10.1093/bioinformatics/btu439
  2 KB (279 words) - 21:21, 6 December 2019
• Newick utils
  ...ree Processing in the UNIX Shell. ''Thomas Junier and Evgeny M. Zdobnov''. Bioinformatics 2010 26:1669-1670 [http://bioinformatics.oxfordjournals.org/content/26/13/1669.full http://bioinformatics.oxfordjournals.org/content/26/13/1669.full]
  3 KB (305 words) - 14:10, 1 September 2021
• Bismark
  |{{#vardefine:url|http://www.bioinformatics.babraham.ac.uk/projects/download.html#bismark}} Bisulfite-Seq applications. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi:
  2 KB (293 words) - 18:17, 12 August 2022
• STAR
  A. Dobin et al, Bioinformatics 2012; doi: 10.1093/bioinformatics/bts635 "STAR: ultrafast universal RNA-seq aligner"
  2 KB (291 words) - 16:01, 22 August 2022
• Mapdamage
  ...ncient DNA damage parameters. Bioinformatics 23rd April 2013. doi: 10.1093/bioinformatics/btt193]
  3 KB (299 words) - 21:28, 16 September 2022
• SortMeRNA
  ...omal RNAs in metatranscriptomic data", Bioinformatics (2012), doi: 10.1093/bioinformatics/bts611.]
  3 KB (299 words) - 17:00, 10 June 2022
• Tax4Fun
  ...enomic 16S rRNA data Bioinformatics (2015) 31 (17): 2882-2884. doi:10.1093/bioinformatics/btv287.]
  3 KB (303 words) - 18:29, 4 February 2020
• V-pipe
  ...rom high-throughput sequencing data." Bioinformatics, January. doi:10.1093/bioinformatics/btab015.
  3 KB (296 words) - 17:20, 22 August 2022
• NextGenMap
  ...013) 29 (21): 2790-2791 first published online August 23, 2013 doi:10.1093/bioinformatics/btt468]
  3 KB (309 words) - 16:24, 19 August 2022
• SeSiMCMC
  Bioinformatics. 2005 May 15;21(10):2240-5. doi: 10.1093/bioinformatics/bti336. Epub 2005 Feb 22.
  3 KB (299 words) - 22:41, 21 August 2022
• MELTING
  ...(2001). MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics, 17: 1226-1227. ...lexible platform to predict the melting temperatures of nucleic acids. BMC Bioinformatics, 13: 101.
  3 KB (306 words) - 19:50, 12 August 2022
• NtEdit
  ...n Bousquet, Joerg Bohlmann, Inanc Birol. 2019. Bioinformatics. doi:10.1093/bioinformatics/btz400]
  3 KB (316 words) - 21:23, 6 December 2019
• Circleator
  ...on of genome-associated data with BioPerl and SVG. Bioinformatics, 10.1093/bioinformatics/btu505.]
  3 KB (319 words) - 21:18, 6 December 2019
• IVA
  Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28.
  2 KB (300 words) - 16:06, 7 December 2021
• BAM-matcher
  ...ker; Susan Branford; Andreas W. Schreiber Bioinformatics 2016 doi: 10.1093/bioinformatics/btw239]
  3 KB (324 words) - 21:07, 6 December 2019
• BRM
  ...apping based on bulked segregant analysis by deep sequencing" published in Bioinformatics. ...hod for QTL mapping based on bulked segregant analysis by deep sequencing. Bioinformatics, 2019.]
  3 KB (320 words) - 21:54, 26 August 2020
• YAHA
  ...on. Bioinformatics (2012) 28(19): 2417-2424. Epub 2012 Jul 24. doi:10.1093/bioinformatics.
  3 KB (320 words) - 20:56, 12 August 2022
• RSeQC
  ...RNA-seq experiments Bioinformatics (2012) 28 (16): 2184-2185. doi: 10.1093/bioinformatics/bts356 pubmed]
  3 KB (328 words) - 17:48, 10 June 2022
• MaSuRCA
  ...A. et al. The MaSuRCA genome Assembler. Bioinformatics (2013). doi:10.1093/bioinformatics/btt476
  3 KB (340 words) - 18:24, 18 August 2022
• CANVAS
  ...ersatile and scalable detection of copy number variants in the journal OUP Bioinformatics] ...btx618 The Canvas Small Pedigree Workflow was published in the journal OUP Bioinformatics: Canvas SPW: calling de novo copy number variants in pedigrees]
  3 KB (342 words) - 22:23, 26 August 2020
• PLAST
  * Composition-based score adjustments as in Bioinformatics 21:902-911 ...) PLAST: parallel local alignment search tool for database comparison. BMC Bioinformatics, vol 10, no 329.
  3 KB (320 words) - 20:23, 12 August 2022
• Ksnp
  Bioinformatics 31: 2877-2878 doi: 10.1093/bioinformatics/btv271.
  3 KB (327 words) - 12:56, 15 August 2022
• USEARCH
  Bioinformatics, 2010 Publication : Bioinformatics
  4 KB (559 words) - 17:19, 22 August 2022
• Xwalk
  ...lizing Distances in Cross-linking Experiments. Bioinformatics, doi:10.1093/bioinformatics/btr348.
  3 KB (345 words) - 16:47, 28 February 2023
• Viralmsa
  ...sequence alignment of viral genomes." Bioinformatics. btaa743. doi:10.1093/bioinformatics/btaa743]
  3 KB (357 words) - 19:56, 27 May 2022
• Matlab add-ons
  Bioinformatics Toolbox Version 4.3 (R2013a)
  2 KB (206 words) - 14:11, 30 June 2017
• ATRAM
  ...bling loci across divergent taxa from next-generation sequencing data. BMC Bioinformatics 16:98 DOI 10.1186/s12859-015-0515-2}} <!--CITATION--> ...bling loci across divergent taxa from next-generation sequencing data. BMC Bioinformatics 16:98 DOI 10.1186/s12859-015-0515-2]
  3 KB (350 words) - 15:23, 12 August 2022
• MEGAHIT
  ...nomics assembly via succinct de Bruijn graph. Bioinformatics, doi: 10.1093/bioinformatics/btv033]
  3 KB (367 words) - 18:31, 18 August 2022
• HTSeq
  ...in print, online at [http://doi:10.1093/bioinformatics/btu638 doi:10.1093/bioinformatics/btu638].
  3 KB (411 words) - 19:05, 12 August 2022
• Pygenometracks
  ...ariate genomic data sets. Bioinformatics. 2020 Aug 3:btaa692. doi: 10.1093/bioinformatics/btaa692. Epub ahead of print. PMID: 32745185.
  3 KB (375 words) - 20:54, 18 May 2023
• ASTRAL
  ...tp://bioinformatics.oxfordjournals.org/cgi/content/full/btu462 doi:10.1093/bioinformatics/btu462].
  3 KB (415 words) - 15:08, 12 August 2022
• Clann
  Clann has been published in Bioinformatics in 2005 under the following title: ...Clann: investigating phylogenetic information through supertree analyses. Bioinformatics 21(3): 390-2.
  3 KB (438 words) - 18:30, 12 August 2022
• MMseqs2
  ...app for fast, interactive sequence searches. Bioinformatics, doi: 10.1093/bioinformatics/bty1057 (2019).]
  3 KB (413 words) - 20:22, 2 October 2023
• SCRATCH-1D
  ...ed SCRATCH suite of predictors developed by the Institute for Genomics and Bioinformatics (IGB) of the University of California, Irvine (UCI). Bioinformatics, vol 30 (18), 2592-2597
  3 KB (381 words) - 20:35, 12 August 2022
• Uproc
  ...es in terms of similarities to known protein families challenges classical bioinformatics. The ultrafast protein classification (UProC) toolbox implements a novel al ...Peter. '''UProC: tools for ultra-fast protein domain classification'''. ''Bioinformatics'', 2014
  3 KB (418 words) - 20:53, 12 August 2022
• SAMStat
  ...ing biases in next generation sequencing data." Bioinformatics doi:10.1093/bioinformatics/btq614 [PMID: 21088025]
  3 KB (429 words) - 20:34, 12 August 2022
• Gmap
  Bioinformatics 2005 21:1859-1875 Bioinformatics 2010 26:873-881
  3 KB (450 words) - 17:11, 15 August 2022
• MetaBCC-LR
  @article{10.1093/bioinformatics/btaa441, journal = {Bioinformatics},
  6 KB (774 words) - 14:28, 15 December 2022
• Ngstools
  ...generation sequencing data.Fumagalli M, Vieira FG, Linderoth T, Nielsen R. Bioinformatics. 2014 May 15;30(10):1486-7 ...t Generation Sequencing Data. Korneliussen T, Albrechtsen A, Nielsen R BMC Bioinformatics. 2014 Nov 25;15(1):356
  5 KB (708 words) - 15:31, 14 December 2022
• Fast-Plast
  ...Usadel. 2014. Trimmomatic: A flexible trimmer for Illumina Sequence Data. Bioinformatics, btu170. ...ck-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics, 27:764-770.
  4 KB (487 words) - 21:20, 6 December 2019
• Scalpel
  Bioinformatics pipeline for discovery of genetic variants from NGS reads.
  2 KB (239 words) - 22:07, 21 August 2022
• Staphb-toolkit
  The StaPH-B ToolKit is a Python library of commonly used bioinformatics tools that help to inform public health action.
  2 KB (248 words) - 19:54, 2 June 2022
• Hyb
  Hyb is a bioinformatics pipeline for analysis of CLASH (crosslinking, ligation and sequencing of hy
  2 KB (247 words) - 15:07, 10 June 2022
• PacBio
  SMRT® Analysis is PacBio's bioinformatics software suite for analyzing single molecule, real-time DNA sequencing data
  2 KB (250 words) - 20:10, 24 August 2022
• Krona
  Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.
  2 KB (254 words) - 19:29, 12 August 2022

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