User contributions for Johnbullard

6 July 2022

• 14:3014:30, 6 July 2022 diff hist +1,135 N PGAP Job Scripts Created page with "Return to main PGAP page... ==Script used to test application installation== <pre> #!/bin/bash #SBATCH --job-name=pgap_20220414_test #SBATCH --mail-type=NONE #SBATCH..." current
• 14:2914:29, 6 July 2022 diff hist +3,233 N PGAP Created page with "Category:Software Category:Biology Category:Genomics Category:Annotation Category:Pipeline {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|PGAP}} |{{#va..." current

14 June 2022

• 17:0917:09, 14 June 2022 diff hist +2,093 N Hgraph2graph Job Scripts Created page with "Return to the main Hgraph2graph page ==Example of script used to test the application installation== <pre> #!/bin/bash #SBATCH --job-name=hgraph2graph_202104..." current
• 17:0617:06, 14 June 2022 diff hist +2,413 N Hgraph2graph Created page with "Category:Software Category:Chemistry {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|hgraph2graph}} |{{#vardefine:url|https://github.com/wengong-jin/hgraph2graph/}}..." current

27 May 2022

• 14:0414:04, 27 May 2022 diff hist +1,216 N SRA-Human-Scrubber Job Scripts Created page with "Return to the SRA-Human-Scrubber main page ==Job script used for testing application installation== <pre> #!/bin/bash #SBATCH --job-name=sra_human_scru..." current
• 14:0114:01, 27 May 2022 diff hist +3,193 N SRA-Human-Scrubber Created page with "Category:Software Category:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|SRA-Human-Scrubber}} |{{#vardefine:url|https://github.com/ncbi/sra-human-scrubber..." current

12 May 2022

• 18:1718:17, 12 May 2022 diff hist +3,268 N LRBinner Created page with "Category:Software Category:Biology Category:Metagenomics Category:Binning {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|LRBinner}} |{{#vardefine:url|https..."

2 May 2022

• 12:5212:52, 2 May 2022 diff hist +532 Structure threader Add info about loading Structure alongside Structure_threader
• 12:3412:34, 2 May 2022 diff hist +1,283 N Structure threader Job Scripts Created page with "Return to main Structure_threader page ==Job script used to test application installation== <pre> #!/bin/bash #SBATCH --job-name=structure_threader_1.3..." current
• 12:3312:33, 2 May 2022 diff hist +2,409 N Structure threader Created page with "Category:Software Category:Utility Category:Wrapper Category:Structure {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Structure_threader}} |{{#vardefine:ur..."

14 April 2022

• 16:3316:33, 14 April 2022 diff hist +95 RNAFramework Job Scripts Modified test with a customer-provided (smaller) dataset and workflow current
• 11:5711:57, 14 April 2022 diff hist +1,874 N RNAFramework Job Scripts Created page with "Return to RNAFramework main page == Job script used for testing application installation == <pre> #!/bin/bash #SBATCH --job-name=rnaframework_2.7.2_test #SBA..."
• 11:5511:55, 14 April 2022 diff hist +2,188 N RNAFramework Created page with "Category:Software Category:Biology Category:RNA Category:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|RNAFramework}} |{{#vardefine:url|http://..."

12 April 2022

• 15:0915:09, 12 April 2022 diff hist +1,151 N Sniffles2 Job Scripts Created page with "Return to main Sniffles2 page == Job Script used for testing application installation == <pre> #!/bin/bash #SBATCH --job-name=sniffles2_2.0.6_test #SBATCH --mai..." current
• 15:0715:07, 12 April 2022 diff hist +2,554 N Sniffles2 Created page with "Category:Software Category:Biology Category:Bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Sniffles2}} |{{#vardefine:url|https://github.com/frit..."

8 April 2022

• 13:5713:57, 8 April 2022 diff hist +3,009 N MGLTools Created page with "Category:Software Category:Biology Category:Molecular Biology Category:Visualization {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|MGLTools}} |{{#vardefin..."

6 April 2022

• 21:1621:16, 6 April 2022 diff hist +1,314 N AutoDock-GPU Job Scripts Created page with "Return to main AutoDock-GPU page ==Job script used for testing application installation== <pre> #!/bin/bash #SBATCH --job-name=autodock-gpu_test #SBATCH --ma..."
• 21:1421:14, 6 April 2022 diff hist +2,853 N AutoDock-GPU Created page with "Category:Software Category:Molecular Docking {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|AutoDock-GPU}} |{{#vardefine:url|https://github.com/ccsb-scripps/AutoDo..."

5 April 2022

• 11:2411:24, 5 April 2022 diff hist +87 SSH Multiplexing No edit summary

4 April 2022

• 16:1416:14, 4 April 2022 diff hist +189 Using SSH Keys To Access HPG No edit summary

25 March 2022

• 14:1914:19, 25 March 2022 diff hist +1,320 N SMC++ Job Scripts Created page with "Return to main SMC++ page == Example job script used for testing application installation == <pre> #!/bin/bash #SBATCH --job-name=smcpp_test #SBATCH --mail-type=NON..." current
• 14:1614:16, 25 March 2022 diff hist +1 m SMC++ No edit summary
• 12:3412:34, 25 March 2022 diff hist −178 m SMC++ No edit summary

8 March 2022

• 20:0320:03, 8 March 2022 diff hist +2,763 N HapCUT2 Created page with "Category:Software Category:Biology Category:Genomics Category:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|HapCUT2}} |{{#vardefine:url|https:/..." current
• 18:1618:16, 8 March 2022 diff hist +1,581 N RMATS-turbo Job Scripts Created page with "Return to the rMATS-turbo main page ==Job script used for testing application installation:== <pre> #!/bin/bash #SBATCH --job-name=rmats-turbo_test #SBATCH --..." current
• 18:1418:14, 8 March 2022 diff hist +2,517 N RMATS-turbo Created page with "Category:Software Category:Biology Category:Genomics Category:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|rMATS-turbo}} |{{#vardefine:url|htt..." current

28 February 2022

• 15:1115:11, 28 February 2022 diff hist +1,866 N Cactus Job Scripts Created page with "Return to main Cactus page == Example of the job script that was used for testing Cactus installation: == <pre> #!/bin/bash #SBATCH --job-name=cactus_test #SBATCH..." current
• 15:0815:08, 28 February 2022 diff hist +218 Cactus Add example job script and step-by-step hint

21 February 2022

• 13:3413:34, 21 February 2022 diff hist +150 PLAST Updated URL and Citations

2 February 2022

• 20:1420:14, 2 February 2022 diff hist +1,543 N IMPUTE5 Job Scripts Created page with "Return to the IMPUTE5 main page ==Example of script used to test application installation== <pre> #!/bin/bash #SBATCH --job-name=impute5_test #SBATCH --mail-type=..." current
• 20:1220:12, 2 February 2022 diff hist +2,958 N IMPUTE5 Created page with "Category:Software Category:Biology Category:Imputation {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|IMPUTE5}} |{{#vardefine:url|https://jmarchini.org/softwar..."
• 18:2718:27, 2 February 2022 diff hist +3,374 N SHAPEIT4 Created page with "Category:Software Category:Biology Category:Sequencing Category:Phasing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|SHAPEIT4}} |{{#vardefine:url|https:/..."

31 January 2022

• 19:0519:05, 31 January 2022 diff hist +3,405 N QTL-seq Created page with "Category:Software Category:Biology Category:Sequencing Category:Pipeline {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|QTL-seq}} |{{#vardefine:url|https:/..." current

28 January 2022

• 13:3013:30, 28 January 2022 diff hist +2 m ParaView No edit summary
• 13:2813:28, 28 January 2022 diff hist +70 ParaView Job Scripts No edit summary
• 13:1713:17, 28 January 2022 diff hist +109 m ParaView Clarify "sbatch " command

27 January 2022

• 22:1322:13, 27 January 2022 diff hist +565 N ParaView Job Scripts Created page with "==ParaView server single node with 32 cores and a GPU== <pre> #!/bin/bash #SBATCH --job-name=paraview_server_test #SBATCH --mail-type=NONE #SBATCH --ntasks=1 #SBATCH --cpus-pe..."
• 22:1122:11, 27 January 2022 diff hist +3,090 ParaView Add section for client/server mode

25 January 2022

• 15:0715:07, 25 January 2022 diff hist +1 VirSieve No edit summary

24 January 2022

• 20:2820:28, 24 January 2022 diff hist +3,683 N VirSieve Created page with "Category:Software Category:Biology Category:Pipeline Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|VirSieve}} |{{#vardefine:url|https://..."

21 January 2022

• 13:3313:33, 21 January 2022 diff hist +2,385 N Modulus Created page with "Category:Software Category:Physics Category:AI Category:NVIDIA {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Modulus}} |{{#vardefine:url|https://developer..."

20 January 2022

• 18:1818:18, 20 January 2022 diff hist +378 Tensorboard Clarify some instructions based on user feedback.
• 17:5717:57, 20 January 2022 diff hist +2 Tensorboard Undo revision 21761: the ampersand is intentional and required to background the TensorBoard process and allow the user to start Firefox without needing to open an additional terminal Tag: Undo
• 15:2615:26, 20 January 2022 diff hist 0 m Sample SLURM Scripts →GPU job

18 January 2022

• 22:5922:59, 18 January 2022 diff hist +2,573 N Compacta Created page with "Category:Software Category:Biology Category:Contig {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Compacta}} |{{#vardefine:url|https://github.com/bioCompU/Comp..."

14 January 2022

• 16:5516:55, 14 January 2022 diff hist +50 Remote Support No edit summary

13 January 2022

• 21:5021:50, 13 January 2022 diff hist +3,974 N Mikado Created page with "Category:Software Category:Biology Category:Genetics Category:Transcripts Category:Pipeline {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Mikado}} |{{..."

7 January 2022

• 16:5416:54, 7 January 2022 diff hist +2,521 N SCOP Created page with "Category:Software Category:Biology Category:Scaffolding Category:Assembly {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|SCOP}} |{{#vardefine:url|https://g..."

4 January 2022

• 18:1418:14, 4 January 2022 diff hist +252 SLAW Add example job script
• 17:0417:04, 4 January 2022 diff hist +2,865 N SLAW Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|SLAW}} |{{#vardefine:url|https://github.com/zamboni-lab/SLAW}} <!--CONFIGURATION: OPTIONAL (|1}} means..."