Search results

• IGB
  ...r you can use to view and explore genomic data and annotations, especially RNA-Seq and ChIP-Seq data sets.
  2 KB (257 words) - 18:41, 15 August 2022
• Barrnap
  [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]
  3 KB (328 words) - 17:55, 10 June 2022
• SCRIPTURE
  Scripture is a method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome to build a transcriptome ab initio. The stati
  3 KB (302 words) - 20:36, 12 August 2022
• Magicblast
  ...taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up the score of all exons. This
  2 KB (304 words) - 16:29, 6 October 2022
• Olego
  [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]
  3 KB (309 words) - 17:44, 19 August 2022
• ViennaRNA
  [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]
  3 KB (396 words) - 19:08, 10 June 2022
• Stampy
  ...recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain
  3 KB (327 words) - 20:45, 12 August 2022
• FEELnc
  ...ate long non-coding RNAs (lncRNAs) based on reconstructed transcripts from RNA-seq data (either with or without a reference genome). For a more general overvi
  3 KB (322 words) - 18:53, 10 July 2020
• BAM-matcher
  ...-genome-sequencing (WGS), whole-exome-sequencing (WES) and RNA-sequencing (RNA-seq) human data, but can also be customised to compare panel data or non-human
  3 KB (324 words) - 21:07, 6 December 2019
• RNAmmer
  [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]
  3 KB (328 words) - 17:35, 10 June 2022
• READemption
  READemption is a pipeline for the computational evaluation of RNA-Seq data. It was originally developed to process dRNA-Seq reads (as introduced
  3 KB (352 words) - 17:58, 1 June 2022
• Arriba
  Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data. It was developed for the use in a clinical research setting. Therefor
  3 KB (363 words) - 14:07, 1 April 2021
• Infernal
  3 KB (305 words) - 19:31, 24 August 2022
• TACO
  TACO: Multi-sample transcriptome assembly from RNA-Seq
  2 KB (234 words) - 18:53, 1 June 2022
• MELTING
  3 KB (306 words) - 19:50, 12 August 2022
• MAJIQ
  ...ether detect, quantify, and visualize local splicing variations (LSV) from RNA-Seq data.
  2 KB (247 words) - 14:59, 10 June 2022
• Hyb
  [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]
  2 KB (247 words) - 15:07, 10 June 2022
• RnaQUAST
  ...are]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-Seq]]
  2 KB (257 words) - 21:57, 21 August 2022
• DoGFinder
  ...package that identifies DoGs and quantifies their expression levels, from RNA-seq data.
  2 KB (252 words) - 21:58, 3 November 2020
• TEToolkit
  TEtranscripts takes RNA-seq (and similar data) and annotates reads to both genes & transposable element
  2 KB (259 words) - 20:46, 12 August 2022

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