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- Galaxy-ML is a web machine learning end-to-end pipeline building framework, with special support to biomedical data.2 KB (284 words) - 14:51, 27 January 2023
- ...genome assembly and mapping. We propose SeqyClean, a specialized cleaning pipeline that alleviates these issues.3 KB (312 words) - 22:41, 21 August 2022
- ...sing Sanger and/or Roche-454 pyrosequencing technologies into contigs. The pipeline gives much higher accuracy in EST assembly than other existing assemblers b3 KB (301 words) - 18:39, 15 August 2022
- MetaLAFFA is a pipeline for annotating shotgun metagenomic data with abundances of functional ortho3 KB (305 words) - 13:52, 23 September 2021
- ...onski K., Metzner K.J., and Beerenwinkel N. 2021. "V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data.3 KB (296 words) - 17:20, 22 August 2022
- ...l should contain the same set of sequences that were input to the original pipeline run, although the order will not be preserved. The FASTQs will be emitted i3 KB (318 words) - 13:56, 8 March 2021
- PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation3 KB (321 words) - 21:23, 6 December 2019
- The tbprofiler pipeline aligns reads to the H37Rv reference using bowtie2, BWA or minimap2 and then3 KB (312 words) - 21:31, 10 February 2023
- SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length trans3 KB (321 words) - 21:24, 6 December 2019
- ProtHint is a pipeline for predicting and scoring hints (in the form of3 KB (329 words) - 20:27, 12 August 2022
- Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seema3 KB (308 words) - 17:13, 10 June 2022
- ...ies, and can generate much longer repeats than existing tools. The overall pipeline is shown in the mannual file. REPdenovo supports the following main functio3 KB (327 words) - 21:43, 21 August 2022
- A genome assembly correction and scaffolding pipeline using long reads, consisting of up to three steps:3 KB (314 words) - 19:00, 10 October 2022
- ...s from gene therapy vector production after NGS sequencing. This automated pipeline can however be used for wider purpose requiring to identify map NGS dataset3 KB (309 words) - 20:40, 10 June 2022
- PBJelly is a highly automated pipeline that aligns long sequencing reads3 KB (309 words) - 17:07, 21 August 2022
- ...eference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an asse3 KB (320 words) - 21:35, 21 August 2022
- An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.3 KB (315 words) - 14:44, 10 July 2023
- ...bly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resulting transcr3 KB (312 words) - 21:22, 6 December 2019
- ...pyrpipe_engine module to integrate any other third-party program in their pipeline.3 KB (311 words) - 15:22, 16 March 2020
- This document is intended to give a technical description of the FEELnc pipeline in order to annotate long non-coding RNAs (lncRNAs) based on reconstructed3 KB (322 words) - 18:53, 10 July 2020