Search results

SOLAR
[[Category:Software]][[Category:Phylogenetics]] SOLAR-Eclipse is an extensive, flexible software package for genetic variance components analysis, including linkage analysi

3 KB (328 words) - 21:24, 6 December 2019
Open-cravat
[[Category:Software]] Please see: Open-CRAVAT Docs for installation instructions and software documentation.

3 KB (388 words) - 20:12, 12 August 2022
Wgd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 19:52, 27 May 2022
PhyloSift
[[Category:Software]][[Category:biology]][[Category:genomics]][[Category:phylogenetics]] hyloSift is a suite of software tools to conduct phylogenetic

2 KB (255 words) - 15:45, 19 August 2022
Grf
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (278 words) - 17:21, 15 August 2022
Smartie-sv
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 18:30, 1 June 2022
Supernova
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]] |{{#vardefine:url|https://support.10xgenomics.com/de-novo-assembly/software/}}

3 KB (306 words) - 16:55, 10 June 2022
Polyply
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (286 words) - 20:48, 18 April 2022
Category:Scheduler
[[Category:Categories]][[Category:Software]]

18 members (1 subcategory, 0 files) - 15:28, 23 August 2022
MOTU
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bork.embl.de/software/mOTU/}}

3 KB (328 words) - 12:00, 19 August 2022
KrakenUniq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 19:35, 15 August 2022
Whiteboxtools
[[Category:Software]][[Category:Phylogenetics]] ...it is meant to serve as an analytical backend for other data visualization software, mainly GIS.

3 KB (408 words) - 17:43, 22 August 2022
BPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software.html}}

2 KB (294 words) - 18:21, 12 August 2022
GlimmerHMM
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|http://ccb.jhu.edu/software/glimmerhmm/}}

3 KB (334 words) - 17:09, 15 August 2022
Plasflow
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (292 words) - 20:17, 31 May 2022
ESPRIT
[[Category:Software]][[Category:Biology]]

4 KB (460 words) - 15:10, 15 August 2022
Delly
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (291 words) - 16:46, 10 June 2022
CellRanger-ATAC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}}

2 KB (281 words) - 13:25, 15 August 2022
Category:Visualization
[[Category:Software]][[Category:Data]]

19 members (0 subcategories, 0 files) - 14:53, 19 August 2022
RAVE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (281 words) - 21:30, 21 August 2022
FSA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 20:38, 23 May 2022
Modules
[[Category:Software]][[Category:Infrastructure]] ...g and maintaining your environment while running a large number of diverse software applications with different requirements can be a daunting task. The Resea

3 KB (428 words) - 18:21, 7 February 2023
YASM
[[Category:Software]][[Category:Programming]]

2 KB (292 words) - 17:53, 22 August 2022
Cobra-tf
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (293 words) - 13:51, 15 August 2022
Clover
[[Category:Software]]

2 KB (296 words) - 13:47, 15 August 2022
LS-DYNA
[[Category:Software]][[Category:Physics]]

3 KB (394 words) - 20:13, 15 August 2022
MC
[[Category:Software]][[Category:Shell]] |{{#vardefine:url|https://www.gnu.org/software/mc/}}

2 KB (269 words) - 21:22, 6 December 2019
MetaCompare
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 21:21, 6 December 2019
Visit
[[Category:Software]][[Category:Visualization]][[Category:Animation]]

3 KB (403 words) - 14:47, 15 March 2024
Relernn
[[Category:Software]]

2 KB (261 words) - 21:20, 6 February 2024
BFAST
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (276 words) - 18:16, 12 August 2022
GAML
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 16:51, 15 August 2022
FLEXLm
[[Category:Software]][[Category:Utility]]

2 KB (263 words) - 16:46, 15 August 2022
Detectron2
[[Category:Software]][[Category:Library]]

3 KB (295 words) - 19:33, 15 July 2021
Xroms
[[Category:Software]]

2 KB (262 words) - 13:36, 12 January 2024
Category:Spectroscopy
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:29, 23 August 2022
ProtExcluder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (329 words) - 21:22, 6 December 2019
Category:File Management
[[Category:Software]]

9 members (0 subcategories, 0 files) - 13:53, 21 October 2022
CAFE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Software for Computational Analysis of gene Family Evolution

3 KB (318 words) - 21:06, 6 December 2019
Gemma LLMs
[[Category:Software]]

2 KB (281 words) - 20:22, 13 May 2024
CisGenome
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (249 words) - 18:30, 12 August 2022
REDItools2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 18:05, 1 June 2022
Knitro
[[Category:Software]][[Category:Math]]

2 KB (286 words) - 19:34, 15 August 2022
GenomeThreader
[[Category:Software]][[Category:phylogenetics]] GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions

3 KB (315 words) - 16:35, 29 November 2021
BLUPF90
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a progra

2 KB (275 words) - 16:18, 10 June 2022
Lumpy
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (235 words) - 19:46, 12 August 2022
SeqKit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (388 words) - 21:24, 6 December 2019
Nubeamdedup
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 17:23, 19 August 2022
Smalt
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] The software employs a hash index of short words of up to 20 nucleotides

3 KB (342 words) - 17:24, 3 June 2022
CMake
[[Category:Software]][[Category:Programming]] ...designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configur

3 KB (326 words) - 13:49, 15 August 2022
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
Mono
[[Category:Software]][[Category:Linux]][[Category:Programming]]

2 KB (289 words) - 17:41, 15 August 2022
Faqcs
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (268 words) - 17:48, 18 May 2023
Glimmer
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|https://ccb.jhu.edu/software/glimmer/index.shtml}}

3 KB (391 words) - 17:09, 15 August 2022
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
Annocript
[[Category:Software]][[Category:Phylogenetics]] ...ormation about the longest ORF and the non-coding potential using external software. Annocript is also capable to identify putative long non-coding RNAs by usi

3 KB (387 words) - 21:18, 6 December 2019
Nlr-annotator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:28, 31 May 2022
Pyani
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 19:44, 21 August 2022
WebLogo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Graphics]]

3 KB (417 words) - 17:40, 22 August 2022
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
Bamaddrg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (302 words) - 20:19, 19 October 2020
Ldak
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] LDAK is a software package for analysing association study data.

2 KB (265 words) - 19:48, 15 August 2022
LIGR
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (249 words) - 19:55, 15 August 2022
HTMLDoc
[[Category:Software]][[Category:Documentation]][[Category:Web]]

2 KB (253 words) - 18:34, 15 August 2022
BALi-Phy
[[Category:Software]][[Category:Phylogenetics]] '''BAli-phy''' is MCMC software developed by Ben Redelings with Marc Suchard for simultaneous Bayesian esti

3 KB (402 words) - 17:19, 14 December 2022
IsONclust
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 13:24, 19 October 2020
PolyPHen
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PolyPhen-2 (Polymorphism Phenotyping v2) is a software tool which predicts possible impact of amino acid substitutions on the stru

3 KB (295 words) - 18:45, 27 May 2022
Dapars
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (306 words) - 20:05, 23 March 2023
CLUMPP
[[Category:Software]][[Category:Biology]] You must have configuration files to be able to run this software. The example configuration file can be copied using the following command:

3 KB (351 words) - 18:33, 12 August 2022
Circompara2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:36, 1 April 2022
CLIPSeqTools
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (303 words) - 20:30, 10 June 2022
SNeP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) traj

2 KB (278 words) - 16:23, 10 June 2022
MITObim
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 15:20, 22 April 2020
PRSice
[[Category:Software]][[Category:Phylogenetics]] PRSice (pronounced 'precise') is a Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic

2 KB (287 words) - 14:26, 1 February 2021
Ampligraph
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (315 words) - 14:44, 10 July 2023
Assembly-stats
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

2 KB (293 words) - 14:56, 12 August 2022
Rainbowfish
[[Category:Software]][[Category:Phylogenetics]]

2 KB (233 words) - 19:18, 2 June 2022
IRFinder
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

2 KB (244 words) - 14:59, 10 June 2022
Stumpy
[[Category:Software]][[Category:Workflow Automation]] ...calable Python Library for Time Series Data Mining. Journal of Open Source Software, 4(39), 1504.

3 KB (430 words) - 15:16, 13 April 2023
Trinity
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA- |{{#vardefine:exe|1}} 

4 KB (556 words) - 17:10, 22 August 2022
Prokka
[[Category:Software]][[Category:Biology]][[Category:Assembly]][[Category:Genomics]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.prokka.shtml}}

2 KB (297 words) - 19:41, 21 August 2022
AGAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (346 words) - 22:01, 15 July 2020
Arriba
[[Category:Software]][[Category:Phylogenetics]]

3 KB (363 words) - 14:07, 1 April 2021
AMOS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.

3 KB (344 words) - 12:41, 12 August 2022
TNTBLAST
[[Category:Software]][[Category:Biology]] TNTBLAST (ThermonucleotideBLAST) is a software program for searching a target database of nucleic acid sequences using an

3 KB (385 words) - 20:08, 2 June 2022
TRANSIT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:29, 6 December 2019
Mercurial
[[Category:Software]][[Category:Revision Control]]

2 KB (253 words) - 19:59, 10 June 2022
Talon
[[Category:Software]]

3 KB (321 words) - 15:13, 23 September 2022
EDTA
[[Category:Software]][[Category:Genomics]]

4 KB (474 words) - 21:27, 14 September 2023
Napari
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 14:23, 19 August 2022
Intervene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (295 words) - 21:21, 6 December 2019
Pathoscope
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

3 KB (323 words) - 17:02, 21 August 2022
Orthologer
[[Category:Software]][[Category:Biology]] ...e:url|https://www.orthodb.org/orthodb_userguide.html#standalone-orthologer-software}}

2 KB (238 words) - 20:03, 31 May 2022
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
CutRunTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 22:20, 26 August 2020
Lazypipe
[[Category:Software]]

4 KB (507 words) - 16:54, 14 December 2022
DiffReps
[[Category:Software]][[Category:Biology]]

4 KB (474 words) - 14:41, 15 August 2022
MIRA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (313 words) - 20:42, 18 August 2022
GetOrganelle
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:21, 6 December 2019
Category:Variant Calling
[[Category:Software]][[Category:Biology]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022

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