Search results

• Fanc
  FAN-C provides a pipeline for analysing Hi-C data starting at mapped paired-end sequencing reads.
  2 KB (281 words) - 15:56, 22 March 2024
• CRISPResso2
  CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing exp
  2 KB (282 words) - 13:25, 11 October 2022
• Pggb
  This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation
  2 KB (287 words) - 19:56, 6 November 2020
• COLMAP
  ...a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface. It offers a wide range of feat
  2 KB (290 words) - 16:53, 6 June 2022
• SibeliaZ
  construction pipeline. The blocks coordinates are output in GFF format and
  2 KB (284 words) - 20:40, 12 August 2022
• IRAP
  iRAP is a flexible RNA-seq analysis pipeline that allows the user to select and apply their preferred combination of exi
  2 KB (296 words) - 20:10, 24 August 2022
• Ciriquant
  CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
  2 KB (275 words) - 15:00, 30 March 2022
• FastPlast
  Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and
  2 KB (288 words) - 20:23, 23 May 2022
• Circompara2
  CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs f
  2 KB (283 words) - 21:36, 1 April 2022
• RiboTaper
  RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet p
  3 KB (293 words) - 13:48, 20 May 2020
• Autometa
  An automated binning pipeline for single metagenomes, in particular host-associated and highly complex on
  3 KB (300 words) - 21:19, 6 December 2019
• Galaxyml
  Galaxy-ML is a web machine learning end-to-end pipeline building framework, with special support to biomedical data.
  2 KB (284 words) - 14:51, 27 January 2023
• SeqyClean
  ...genome assembly and mapping. We propose SeqyClean, a specialized cleaning pipeline that alleviates these issues.
  3 KB (312 words) - 22:41, 21 August 2022
• IAssembler
  ...sing Sanger and/or Roche-454 pyrosequencing technologies into contigs. The pipeline gives much higher accuracy in EST assembly than other existing assemblers b
  3 KB (301 words) - 18:39, 15 August 2022
• MetaLAFFA
  MetaLAFFA is a pipeline for annotating shotgun metagenomic data with abundances of functional ortho
  3 KB (305 words) - 13:52, 23 September 2021
• V-pipe
  ...onski K., Metzner K.J., and Beerenwinkel N. 2021. "V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput sequencing data.
  3 KB (296 words) - 17:20, 22 August 2022
• Bamtofastq
  ...l should contain the same set of sequences that were input to the original pipeline run, although the order will not be preserved. The FASTQs will be emitted i
  3 KB (318 words) - 13:56, 8 March 2021
• Popoolation
  PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation
  3 KB (321 words) - 21:23, 6 December 2019
• Tbprofiler
  The tbprofiler pipeline aligns reads to the H37Rv reference using bowtie2, BWA or minimap2 and then
  3 KB (312 words) - 21:31, 10 February 2023
• SQANTI
  SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length trans
  3 KB (321 words) - 21:24, 6 December 2019

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