Search results

• Meraculous
  ...Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by eschewing an
  3 KB (354 words) - 18:36, 10 June 2022
• KisSplice
  ...is around 5Gb for 100M reads. KisSplice is not a full-length transcriptome assembler. This means that it will output the variable regions of the transcripts, no
  3 KB (359 words) - 19:33, 15 August 2022
• Shasta
  The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads Computational methods used by the Shasta assembler include:
  3 KB (402 words) - 21:24, 6 December 2019
• Velvet
  Sequence assembler for very short reads. Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa o
  4 KB (523 words) - 17:06, 14 December 2022
• Pandaseq
  PANDASEQ is a PAired-eND Assembler for DNA sequences.
  2 KB (239 words) - 18:08, 19 August 2022
• W2rap-contigger
  An Illumina PE genome contig assembler
  2 KB (246 words) - 21:29, 6 December 2019
• Meryl
  ...ear total rewrite of 'meryl' that appeared in both project kmer and Celera Assembler.
  2 KB (254 words) - 22:26, 8 September 2020
• GapCloser
  emerging during the scaffolding process by SOAPdenovo or other assembler,
  2 KB (264 words) - 16:52, 15 August 2022
• Pbipa
  Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was des
  2 KB (268 words) - 21:58, 27 April 2022
• SPAdes
  St. Petersburg genome assembler
  2 KB (280 words) - 15:47, 22 August 2022
• Zorro
  ZORRO is a hybrid sequencing technology assembler. It merges two sets of pre-assembled contigs into a more contiguous and con
  2 KB (284 words) - 17:54, 22 August 2022
• MITObim
  ...lly developed for Illumina data, but thanks to the versatility of the MIRA assembler, MITObim supports in principle also data from the Iontorrent, 454 and PacBi
  3 KB (301 words) - 15:20, 22 April 2020
• Scallop
  Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as
  2 KB (289 words) - 14:44, 26 January 2021
• Haploflow
  Haploflow is a strain-aware viral genome assembler for short read sequence data. It uses a flow algorithm on a deBruijn graph
  2 KB (287 words) - 20:31, 3 January 2022
• SCOP
  be produced by any assembler. The input read data of SCOP is paired-end or
  2 KB (295 words) - 17:31, 15 August 2022
• Raven
  Raven is a de novo genome assembler for long uncorrected reads.
  2 KB (284 words) - 21:14, 20 November 2023
• Compacta
  the assembler to a smaller set of representative sequences, preserving
  3 KB (294 words) - 13:52, 15 August 2022
• Clover
  Clover is a clustering-oriented de novo assembler for Illumina sequences,
  2 KB (296 words) - 13:47, 15 August 2022
• SMARTdenovo
  SMARTdenovo is a de novo assembler for PacBio and Oxford Nanopore (ONT) data. It produces an assembly from all
  2 KB (296 words) - 21:24, 6 December 2019
• NOVOPlasty
  NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.
  3 KB (310 words) - 21:23, 6 December 2019

View (previous 20 | next 20) (20 | 50 | 100 | 250 | 500)