Search results

• 4p
  [[Category:Software]][[Category:Biology]][[Category:Variant Calling]] population genetics statistics from large SNPs dataset.
  2 KB (285 words) - 20:36, 11 August 2022
• FastStructure
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...://rajanil.github.io/fastStructure/www.genetics.org/content/197/2/573.full Genetics], [http://rajanil.github.io/fastStructure/biorxiv.org/content/early/2013/12
  3 KB (297 words) - 18:54, 12 August 2022
• EIGENSOFT
  [[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://genetics.med.harvard.edu/reich/Reich_Lab/Software.html}}
  3 KB (295 words) - 14:58, 15 August 2022
• MEGA
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Molecular Evolutionary Genetics Analysis
  3 KB (337 words) - 20:30, 15 December 2020
• Alder
  [[Category:Software]][[Category:biology]][[Category:genomics]] ...ing Admixture Histories of Human Populations Using Linkage Disequilibrium. Genetics, 2013.
  3 KB (305 words) - 12:33, 12 August 2022
• GenGen
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...for analysis of genome-wide association studies. American Journal of Human Genetics, 81:1278-1283, 2007]
  3 KB (326 words) - 17:36, 10 June 2022
• TASSEL
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]] ...e biology found in many plants and breeding situations.  Compared to human genetics, many crops are highly diverse both at the nucleotide level and structural
  3 KB (386 words) - 16:13, 22 August 2022
• PGDSpider
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...llele frequency or genetic distances). Besides the conventional population genetics formats, PGDSpider integrates population genomics data formats commonly use
  3 KB (387 words) - 19:04, 10 June 2022
• SMR
  [[Category:Biology]] ...expression quantitative trait loci (eQTL) studies (Zhu et al. 2016 Nature Genetics). The methodology can be interpreted as an analysis to test if the effect s
  3 KB (362 words) - 18:27, 19 August 2021
• BEAGLE
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...l method for detecting identity by descent. The American Journal of Human Genetics 88:173-182.
  5 KB (615 words) - 15:36, 14 December 2022
• MIGRATE-N
  [[Category:Software]][[Category:Genomics]][[Category:Biology]] ...fective population numbers in two populations using a coalescent approach. Genetics, 152(2):763–73, 1999
  5 KB (636 words) - 16:05, 22 December 2022
• Msvar
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...software for statistical inference in population genetics and evolutionary biology.
  2 KB (260 words) - 13:35, 19 August 2022
• Ngstools
  [[Category:Software]][[Category:biology]][[Category:NGS]] ngsTools is a collection of programs for population genetics analyses from NGS data, taking into account data statistical uncertainty. T
  5 KB (708 words) - 15:31, 14 December 2022
• Primer3
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...ction"). PCR is an essential and ubiquitous tool in genetics and molecular biology. Primer3 can also design hybridization probes and sequencing primers.
  2 KB (294 words) - 20:26, 12 August 2022
• SMC++
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]] ...ence of population history from hundreds of unphased whole genomes. Nature Genetics, 49(2):303–309, 2017.]
  2 KB (268 words) - 23:52, 21 August 2022
• Ldsc
  [[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ...s Confounding from Polygenicity in Genome-Wide Association Studies. Nature Genetics, 2015.]
  2 KB (283 words) - 13:30, 15 August 2022
• LFMM
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...LFMM computer program includes an integrated framework based on population genetics, ecological modeling and statistical techniques for screening genomes for s
  3 KB (337 words) - 19:50, 15 August 2022
• Kvarq
  [[Category:Biology, Genetics]]
  2 KB (287 words) - 15:26, 21 June 2023
• Package-GFE
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...(2015) Genotype-frequency estimation from high-throughput sequencing data. Genetics (in press).
  2 KB (280 words) - 16:45, 10 June 2022
• Ancestryhmm
  [[Category:Software]][[Category:Genomics]][[Category:Biology]] ...e using next generation sequence data in samples of arbitrary ploidy. PLoS genetics, 13(1), p.e1006529.
  2 KB (291 words) - 21:25, 9 May 2023

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