Search results

• DVGfinder
  ...the most used DVGs search algorithms, ViReMa-a and DI-tector, in a unique workflow, making the analysis of a sample easier and more intuitive. Also, DVGfinder
  3 KB (319 words) - 13:59, 31 July 2023
• Mitohifi
  MitoHiFi is a python workflow that assembles mitogenomes from Pacbio HiFi reads.
  3 KB (312 words) - 17:01, 21 July 2022
• PBJelly
  to produce upgraded draft genomes. Each step in PBJelly's workflow can be run
  3 KB (309 words) - 17:07, 21 August 2022
• Pyrpipe
  ...ced as "pyre-pipe") is a python package to easily develop RNA-Seq analyses workflow by integrating popular RNA-Seq analysis programs in an object oriented mann
  3 KB (311 words) - 15:22, 16 March 2020
• SSH Multiplexing
  If you use a Linux or MacOS computer and your workflow involves making
  2 KB (342 words) - 13:40, 26 June 2023
• Geomxngspipeline
  ...S Pipeline, developed by NanoString, is an essential part of the GeoMx NGS workflow. The Pipeline processes RNA-sequencing files (FASTQ files) from Illumina se
  3 KB (332 words) - 17:51, 29 January 2024
• Parallel
  [[Category:Software]][[Category:Shell]][[Category:Workflow Automation]]
  3 KB (334 words) - 16:46, 21 August 2022
• Ansible
  [[Category:Software]][[Category:Workflow Automation]]
  3 KB (348 words) - 14:17, 12 August 2022
• CANVAS
  [https://doi.org/10.1093/bioinformatics/btx618 The Canvas Small Pedigree Workflow was published in the journal OUP Bioinformatics: Canvas SPW: calling de nov
  3 KB (342 words) - 22:23, 26 August 2020
• Nf-core
  [[Category:Software]][[Category:Biology]][[Category:Workflow Automation]]
  3 KB (332 words) - 18:51, 15 August 2022
• Nextflow
  [[Category:Software]][[Category:Biology]][[Category:Workflow Automation]]
  3 KB (336 words) - 16:24, 19 August 2022
• Nipype
  within a single workflow. Nipype provides an environment that encourages
  3 KB (348 words) - 20:07, 12 August 2022
• Biolite
  ...archives analysis results that can be accessed across multiple stages of a workflow, or from different workflows.
  3 KB (362 words) - 12:54, 15 August 2022
• Musket
  ...ectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de
  3 KB (351 words) - 13:44, 19 August 2022
• STAR-CCM+
  ...ineering process, STAR-CCM+ helps you to entirely automate your simulation workflow and perform iterative design studies with minimal user interaction.
  3 KB (363 words) - 16:01, 22 August 2022
• FastANI
  ...te and draft genome assemblies. Its underlying procedure follows a similar workflow as described by Goris et al. 2007. However, it avoids expensive sequence al
  3 KB (380 words) - 21:21, 6 December 2019
• HaMStR
  ...//www.deep-phylogeny.org/hamstr/images/hamstr.png here] for details on the workflow.
  3 KB (420 words) - 20:09, 12 August 2022
• MOSAIK
  At this time, the workflow consists of supplying sequences in FASTA, FASTQ, Illumina Bustard & Gerald,
  3 KB (414 words) - 11:59, 19 August 2022
• Stumpy
  [[Category:Software]][[Category:Workflow Automation]]
  3 KB (430 words) - 15:16, 13 April 2023
• MANTA
  ...le SVs, medium-sized indels and large insertions within a single efficient workflow. The method is designed for rapid analysis on standard compute hardware: NA
  3 KB (432 words) - 19:27, 10 June 2022
• HiC-Pro
  ...or on a computational cluster. HiC-Pro is sequential and each step of the workflow can be run independantly.
  3 KB (432 words) - 18:17, 15 August 2022
• Persistent Terminal Sessions
  =Workflow=
  4 KB (719 words) - 13:36, 2 January 2023
• Apptainer
  [[Category:Software]][[Category:Workflow Automation]]
  4 KB (609 words) - 16:30, 12 February 2024
• Get Help
  ...works, ran into a problem, have a question, or would like to improve your workflow here are the steps you can take. Here's the order of actions we recommend t
  5 KB (801 words) - 13:21, 26 March 2024
• Globus
  ...eed to initiate Globus transfers from the command line e.g. as a part of a workflow you may want to use the [https://docs.globus.org/cli/ Globus Command-Line I
  11 KB (1,849 words) - 14:14, 31 January 2024

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