Search results

• Checkv
  CheckV is a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identif
  2 KB (278 words) - 13:58, 18 October 2022
• GROCSVs
  ...Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequence assemb
  2 KB (274 words) - 21:21, 6 December 2019
• Dragonflye
  Dragonflye is a pipeline that aims to make assembling Oxford Nanopore reads quick and easy. Still wo
  2 KB (283 words) - 20:18, 12 April 2022
• Blast2GO CLI
  ...igh-performance and automatic functional annotation tasks. This Annotation Pipeline allows your to integrate and automate your functional annotation task in a
  2 KB (282 words) - 20:19, 24 August 2022
• PhyloFlash
  phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition o
  2 KB (279 words) - 00:09, 29 October 2020
• Seekdeep
  The SeekDeep pipeline is intended for use on targeted amplicon sequencing data for haplotype freq
  2 KB (281 words) - 17:03, 24 July 2023
• FMRIPrep
  fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses
  2 KB (288 words) - 16:47, 17 October 2023
• Shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identify
  2 KB (287 words) - 16:12, 24 November 2020
• Macrel
  Macrel: (Meta)genomic AMP Classification and Retrieval is a pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.
  2 KB (279 words) - 17:45, 10 May 2024
• C-wap
  C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read (Illumin
  2 KB (281 words) - 13:16, 15 August 2022
• Fanc
  FAN-C provides a pipeline for analysing Hi-C data starting at mapped paired-end sequencing reads.
  2 KB (281 words) - 15:56, 22 March 2024
• CRISPResso2
  CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome editing exp
  2 KB (282 words) - 13:25, 11 October 2022
• Pggb
  This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation
  2 KB (287 words) - 19:56, 6 November 2020
• COLMAP
  ...a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface. It offers a wide range of feat
  2 KB (290 words) - 16:53, 6 June 2022
• SibeliaZ
  construction pipeline. The blocks coordinates are output in GFF format and
  2 KB (284 words) - 20:40, 12 August 2022
• IRAP
  iRAP is a flexible RNA-seq analysis pipeline that allows the user to select and apply their preferred combination of exi
  2 KB (296 words) - 20:10, 24 August 2022
• Ciriquant
  CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
  2 KB (275 words) - 15:00, 30 March 2022
• FastPlast
  Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and
  2 KB (288 words) - 20:23, 23 May 2022
• Circompara2
  CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs f
  2 KB (283 words) - 21:36, 1 April 2022
• RiboTaper
  RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet p
  3 KB (293 words) - 13:48, 20 May 2020

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