Search results

• Ibdne
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...ation size from segments of identity by descent. American Journal of Human Genetics. In Press. doi:10.1016/j.ajhg.2015.07.012]
  3 KB (308 words) - 17:05, 27 May 2022
• Momi
  [[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] ...d sample frequency spectrum (SFS), a statistic commonly used in population genetics, and uses it to fit demographic history.
  3 KB (305 words) - 19:03, 4 April 2022
• BAPS
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] to the population genetics context.
  3 KB (313 words) - 18:07, 12 August 2022
• ClinicaDL
  [[Category:Software]][[Category:Biology]][[Category:imaging]][[Category:Machine Learning]] ...tion of multimodal data (neuroimaging, clinical and cognitive evaluations, genetics...), most often with longitudinal follow-up.
  3 KB (323 words) - 13:41, 15 August 2022
• Allhic
  [[Category:Software]][[Category:Genomics]][[Category:Biology]] ...fined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nature Genetics, doi:10.1038/s41588-018-0237-2 (2018).
  3 KB (299 words) - 12:35, 12 August 2022
• Meta-Tissue
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genetics.cs.ucla.edu/metatissue/index.html}}
  3 KB (328 words) - 19:24, 18 August 2022
• EGene-MVN
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genetics.cs.ucla.edu/egene-mvn/index.html}}
  3 KB (327 words) - 14:57, 15 August 2022
• VarScan
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...ly parallel sequencing technologies has fundamentally changed the study of genetics. New platforms like the Illumina HiSeq2000 yield unprecedented levels of se
  3 KB (324 words) - 20:54, 12 August 2022
• Minimac
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...imputation in genome-wide association studies through pre-phasing. Nature Genetics 2012.
  3 KB (332 words) - 20:11, 18 August 2022
• TreeMix
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...opulation splits and mixtures from genome-wide allele frequency data. PLoS Genetics.]
  3 KB (356 words) - 17:56, 10 June 2022
• Baypass
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...erentiation and Association Analysis with population-specific covariables. Genetics, 201: 1555-1579.]
  3 KB (355 words) - 21:05, 6 December 2019
• FAST
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ce et al. (2015). FAST: FAST Analysis of Sequences Toolbox in Frontiers in Genetics, and Stajich et al. (2002)]
  3 KB (358 words) - 21:21, 6 December 2019
• TWINSCAN
  [[Category:Software]][[Category:biology]][[Category:genomics]] ...eakthroughs in the accuracy of automated genome annotation. Nature Reviews Genetics, 9(1), 62-73. doi:10.1038/nrg2220
  3 KB (386 words) - 20:20, 27 May 2022
• IMPUTE5
  [[Category:Biology]] form. PLOS Genetics 16(11): e1009049
  3 KB (351 words) - 18:49, 15 August 2022
• Haphpipe
  [[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.
  3 KB (405 words) - 16:40, 14 March 2023
• Bayenv
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...g Environmental Correlations to Identify Loci Underlying Local Adaptation. Genetics. 2010]
  3 KB (388 words) - 19:03, 10 June 2022
• AdmixTools
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ...e_files/2012_Patterson_AncientAdmixture_Genetics.pdf N. Patterson et al. ''Genetics'', vol 192:'''1065–1093''']
  3 KB (400 words) - 20:50, 11 August 2022
• SHEsisPlus
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] [3] Hedrick PW. Gametic disequilibrium measures: proceed with caution. Genetics 1987 Oct;117(2):331-41.
  3 KB (344 words) - 15:04, 19 August 2022
• Platypus
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...nd is being used in clinical sequencing trials in the Mainstreaming Cancer Genetics programme. Platypus has been thoroughly tested on data mapped with Stampy a
  3 KB (435 words) - 19:21, 10 June 2022
• BayeScan
  [[Category:Software]][[Category:Biology]][[Category:Variant Calling]] ...ropriate for both dominant and codominant markers: A Bayesian perspective. Genetics 180: 977-993
  3 KB (402 words) - 18:10, 12 August 2022

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