Search results

• Read2tree
  ...allows a user to bypass several standard steps, including read filtering, assembly, gene prediction, gene annotation, all vs. all comparisons, orthology predi
  2 KB (292 words) - 18:42, 12 July 2023
• Haploflow
  ...ritz, A., Bremges, A., Deng, ZL. et al. Haploflow: strain-resolved de novo assembly of viral genomes. Genome Biol 22, 212 (2021)]
  2 KB (287 words) - 20:31, 3 January 2022
• SCOP
  [[Category:Assembly]]
  2 KB (295 words) - 17:31, 15 August 2022
• Crass
  [[Category:Software]][[Category:Biology]][[Category:Assembly]]
  3 KB (300 words) - 14:02, 15 August 2022
• Medaka
  ...works applied from a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can b
  2 KB (290 words) - 14:37, 21 August 2023
• Kvarq
  ...s in FastQ format. Mapping to a whole-genome reference sequence or de novo assembly or the short reads is not necessary.
  2 KB (287 words) - 15:26, 21 June 2023
• Raven
  [[Category:Software]][[Category:assembly]]
  2 KB (284 words) - 21:14, 20 November 2023
• HapCompass
  HapCompass implements a novel HAPCOMPASS algorithm for haplotype assembly of densely sequenced human genome data. The algorithm operates on a graph w
  2 KB (287 words) - 18:13, 15 August 2022
• SMARTdenovo
  ...e novo assembler for PacBio and Oxford Nanopore (ONT) data. It produces an assembly from all-vs-all raw read alignments without an error correction stage. It a
  2 KB (296 words) - 21:24, 6 December 2019
• FLASh
  ...gnificantly improve genome assemblies. They can also improve transcriptome assembly when FLASH is used to merge RNA-seq data.
  2 KB (297 words) - 16:44, 15 August 2022
• NOVOPlasty
  ...290925 Dierckxsens N., Mardulyn P. and Smits G. (2016) NOVOPlasty: De novo assembly of organelle genomes from whole genome data. Nucleic Acids Research, doi: 1
  3 KB (310 words) - 21:23, 6 December 2019
• StringMLST
  ...sequencing reads. stringMLST predicts the ST of an isolate in a completely assembly and alignment free manner. The tool is designed in a light-weight, platform
  2 KB (292 words) - 20:45, 12 August 2022
• Supernova
  |{{#vardefine:url|https://support.10xgenomics.com/de-novo-assembly/software/}} Supernova is a software package for de novo assembly from Chromium Linked-Reads that are made from a single whole-genome library
  3 KB (306 words) - 16:55, 10 June 2022
• Hifiasm
  ...ces a new graph binning algorithm and achieves the best haplotype-resolved assembly given trio data.
  3 KB (303 words) - 22:23, 27 August 2020
• YAK
  ...ific use cases: 1) to robustly estimate the base accuracy of CCS reads and assembly contigs, and 2) to investigate the systematic error rate of CCS reads. It a
  2 KB (293 words) - 16:10, 10 March 2021
• Mccortex
  Multi-sample de novo assembly and variant calling using Linked de bruijn graphs. Variant calling with and
  3 KB (297 words) - 22:22, 8 September 2020
• DASTool
  ...are generated independently when all binning tools are applied to the same assembly.
  3 KB (315 words) - 21:21, 6 December 2019
• YASRA
  YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially fro
  3 KB (304 words) - 20:56, 12 August 2022
• SeqyClean
  ...ise, which is presented as low-quality bases, has serious impact on genome assembly and mapping. We propose SeqyClean, a specialized cleaning pipeline that all
  3 KB (312 words) - 22:41, 21 August 2022
• Trycycler
  ...assemblies for the same isolate, Trycycler can combine them into a single assembly that is better than any of your inputs.
  3 KB (305 words) - 18:13, 22 July 2021

View (previous 20 | next 20) (20 | 50 | 100 | 250 | 500)