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• LCModel
  ...com/lcm-test.shtml. For GUI use, follow instructions from an Open OnDemand terminal.}} OOD desktop -> start a terminal
  4 KB (497 words) - 16:28, 15 December 2022
• SSH Using VS Code
  ...to remotely connect to HiPerGator, using an SSH key. To use VS Code from a terminal, see [https://help.rc.ufl.edu/doc/VS_Code_Remote_Development VS Code Remote ...the server. If a new window doesn't open automatically, you can open a new Terminal window, which should show that you're connected to a login node.
  3 KB (551 words) - 20:31, 30 January 2024
• BEAST
  * Load the beast module in the terminal * Load the beast module in the terminal
  4 KB (553 words) - 14:27, 27 June 2023
• Github-cli
  ...nd line. It brings pull requests, issues, and other GitHub concepts to the terminal next to where you are already working with git and your code.
  2 KB (266 words) - 20:06, 19 December 2023
• Xterm
  In computing, xterm is the standard terminal emulator for the X Window System. A user can have many different invocation
  2 KB (278 words) - 19:37, 11 July 2022
• Weka
  ...software that can be accessed through a graphical user interface, standard terminal applications, or a Java API. It is widely used for teaching, research, and
  3 KB (304 words) - 16:07, 6 June 2022
• MGEScan
  MGEScan on Galaxy is the latest version of MGEScan to identify long terminal repeats (LTR) and non-LTR retroelements in eukaryotic genomic sequences on
  2 KB (299 words) - 16:58, 10 June 2022
• Slurm
  ...sly. HiPerGator offers options for terminal multiplexing. See [[Persistent Terminal Sessions]] for more details.
  5 KB (763 words) - 17:37, 5 March 2024
• Multimatch-gaze
  ...rovides the possibility to compute the similarity of two scan paths with a terminal command or within a Python instance.
  3 KB (318 words) - 19:07, 16 May 2023
• EDirect
  from a UNIX terminal window. Functions take search terms from command-line
  3 KB (357 words) - 14:55, 15 August 2022
• PhotoScan
  Once you see the desktop, open the Terminal from the toolbar in the bottom.
  3 KB (316 words) - 19:57, 10 January 2023
• Rclone
  # Once the session starts connect to it and open a terminal by clicking on its icon. # Use 'New > Open Tab' menu option or 'Ctrl+Shift+T' key combo in the terminal to make sure you have two tabs to start a web browser
  6 KB (763 words) - 20:07, 30 October 2023
• GUI Programs
  * Launch a terminal
  2 KB (390 words) - 14:42, 30 January 2023
• LMAP
  A package of user-friendly terminal/command-line and interactive applications developed in Perl, to enable the
  3 KB (330 words) - 20:03, 15 August 2022
• ECE
  Open the URL shown in the terminal to see the application GUI in the browser.
  3 KB (360 words) - 21:39, 3 March 2023
• ASHS
  Use an [https://ood.rc.ufl.edu OnDemand] desktop terminal to run scripts, which open images and GUI windows.
  3 KB (353 words) - 20:32, 24 August 2022
• Probalign
  ...benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On
  3 KB (349 words) - 19:36, 21 August 2022
• Open OnDemand Troubleshooting
  ...u -sh ~/* or use the 'ncdu' tool from the 'ufrc' environment module in the terminal. If you find that your home directory is full, you remove unnecessary files
  2 KB (390 words) - 14:27, 26 September 2023
• TreeTime
  ...ies, i.e., a tree where all branches are scaled such that the positions of terminal nodes correspond to their sampling times and internal nodes are placed at t
  3 KB (370 words) - 17:44, 2 November 2020
• Vscode
  Then launch the application by running the following in the same terminal:
  3 KB (405 words) - 14:15, 26 February 2024
• Asaq
  The ASAQ method has been implemented in C++ to be run in a UNIX terminal. Given an alignment of four sequences, ASAQ computes three weights, one for
  3 KB (374 words) - 15:10, 1 June 2022
• Open OnDemand
  # Launch a terminal HiPerGator Shell Access: This link opens a terminal shell in your browser that allows access the HiPerGator
  7 KB (1,059 words) - 16:46, 5 May 2023
• ASTRAL
  ...ASTRAL (java application), for example 2g run the following command in the terminal or the job script:
  3 KB (415 words) - 15:08, 12 August 2022
• Jupyter Notebooks
  * Launch a terminal ===Open a Terminal===
  18 KB (2,983 words) - 18:58, 23 March 2023
• R8s
  ...nerally a better reflection of the information content of fossil evidence. Terminal nodes are permitted to occur at any point in time, allowing investigation o
  3 KB (456 words) - 21:24, 6 December 2019
• FAQ
  ...see what's taking up the storage quota is the '''ncdu''' command in a bash terminal (also available with the "ufrc" module). You can run that command and delet * Method for accessing HPG: Jupyterhub, Open OnDemand, or Terminal interface used.
  7 KB (1,199 words) - 02:11, 17 April 2024
• Federated Account Request
  ...create an SSH keypair on Mac, Linux or Windows. On Mac or Linux, open the Terminal application, on Windows, open the Command Prompt.
  4 KB (634 words) - 17:53, 12 September 2023
• UFRC environment module
  | ncdu || [https://dev.yorhel.nl/ncdu terminal 'gui' for showing directory sizes].
  4 KB (606 words) - 15:57, 23 August 2023
• Providing Access To Data
  *Start a new terminal from the Desktop session and load Firefox by running:
  4 KB (626 words) - 19:11, 24 January 2023
• Spark
  First, load spark module in the terminal where you want to submit a spark job. Load spark module in the terminal where you want to submit a spark job.
  11 KB (1,573 words) - 22:01, 15 December 2022
• PyTorch
  ...ommand you would use if you were running your PyTorch application from the terminal.
  5 KB (691 words) - 16:39, 14 December 2022
• TensorFlow
  ...and you would use if you were running your TensorFlow application from the terminal.
  6 KB (790 words) - 15:25, 14 December 2022
• Basic Linux Use
  ...> where ''USER'' is your username that you can see on the left side of the terminal prompt. By the way, we use <code>"</code> quotes to make the commands stand
  6 KB (1,054 words) - 14:45, 9 November 2022
• Omniverse
  3. open a terminal and make the downloaded file executable: <code>chmod +x omniverse-launcher
  7 KB (983 words) - 14:48, 25 July 2023
• Create SSH Keys Using Putty
  ''Note:'' You can also use a text editor in a terminal or a console session in [[Open OnDemand]] to edit ~/.ssh/authorized_keys fi
  7 KB (1,195 words) - 13:39, 26 June 2023
• Blast2GO
  #The terminal will remain with no input command line, but any MySQL traffic (using port 3
  6 KB (920 words) - 14:08, 16 March 2023
• Globus
  ...u to perform authentication. This happens if you're, for example, are in a terminal in OnDemand console or desktop session and run
  11 KB (1,849 words) - 14:14, 31 January 2024
• Storage
  ...sizes, browsing a directory tree, and removing files and directories in a terminal (ssh session).
  12 KB (2,046 words) - 15:26, 13 July 2023

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