Search results

• PGDSpider
  ...meters or statistics for specific regions, and thus perform sliding window analysis over large genomic regions. ...t/28/2/298.full Lischer HEL and Excoffier L (2012) PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs. B
  3 KB (387 words) - 19:04, 10 June 2022
• QualiMap
  ...d-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. *rnaseq - Evaluate RNA-seq alignment data
  3 KB (326 words) - 19:32, 24 August 2022
• Pyrpipe
  ...ed on local computers or on HPC environments to manage analysis of RNA-Seq data. Users can use the easy-to-use APIs to popular bioinformatic tools provided
  3 KB (311 words) - 15:22, 16 March 2020
• GWAMA
  ...tions via meta-analysis, without direct exchange of genotype and phenotype data. ...11-288 Magi R, Morris AP: GWAMA: software for genome-wide association meta-analysis. BMC Bioinformatics 2010, 11:288.]
  3 KB (322 words) - 13:33, 26 May 2020
• ClinicaDL
  ...th neurological and psychiatric diseases and the acquisition of multimodal data (neuroimaging, clinical and cognitive evaluations, genetics...), most often ...x, PETPVC, SPM), machine learning (Scikit-learn) and the BIDS standard for data organization.
  3 KB (323 words) - 13:41, 15 August 2022
• GenGen
  ...free software tools to facilitate the analysis of high-throughput genomics data sets. The package is currently a work-in-progress and infrequently updated. .../S0002-9297(07)63775-6 Wang K, Li M, Bucan M. Pathway-based approaches for analysis of genome-wide association studies. American Journal of Human Genetics, 81:
  3 KB (326 words) - 17:36, 10 June 2022
• Alphaimpute
  ...bForAlphaImpute (Kerr and Kinghorn, 1996). All information on the model of analysis, input files and their layout, is specified in a single parameter file.
  3 KB (337 words) - 12:37, 12 August 2022
• Ssr pipeline
  ...llites conforming to user specified parameters. Each of the three separate analysis modules also can be used independently to provide greater flexibility or to ...ughput DNA sequence data (ver. 1.1, February 2014): U.S. Geological Survey Data Series 778.
  4 KB (501 words) - 18:55, 6 June 2022
• REMORA
  [[Category:Software]][[Category:Performance Analysis]][[Category:Performance Analysis]] * CPU Power and Temperature data
  3 KB (330 words) - 20:39, 24 August 2022
• LIQA
  LIQA (Long-read Isoform Quantification and Analysis) is an Expectation-Maximization alternative splicing (DAS) events using long-read RNA-seq data. LIQA incorporates
  3 KB (319 words) - 20:03, 15 August 2022
• Knime
  [[Category:Data Science]] ...-code interface offers an easy introduction for beginners, and an advanced data science set of tools for experienced users.
  3 KB (318 words) - 14:46, 9 June 2023
• QIIME
  ...from representative sequences of OTUs, and through downstream statistical analysis, visualization, and production of publication-quality graphics. QIIME has b
  4 KB (555 words) - 15:15, 19 August 2022
• Metabin
  ...nstructing a taxonomic tree of the results, and for performing comparative analysis of the taxonomic profiles for multiple metagenomic datasets.
  4 KB (588 words) - 19:25, 18 August 2022
• Pypaftol
  ...applicable and hopefully useful beyond PAFTOL, e.g. for processing HybSeq data in general. Functionality can be accessed either via the paftools script or
  3 KB (307 words) - 14:11, 9 April 2024
• LDhat
  ...languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code. *convert: Simple manipulation of DNA sequence data
  2 KB (296 words) - 17:09, 10 June 2022
• MEGA
  Molecular Evolutionary Genetics Analysis Software suite for analyzing DNA and protein sequence data from species and populations.
  3 KB (337 words) - 20:30, 15 December 2020
• Trans-ABySS
  De novo assembly of RNAseq data using ABySS ....html Robertson, G., et al. 2010. De novo assembly and analysis of RNA-seq data. Nature Methods 7, 909-912(2010)]
  2 KB (260 words) - 15:39, 10 June 2022
• Biodiverse
  Biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic, trait and matr ...W., Lubarsky, E. & Rosauer, D.F. (2010) Biodiverse, a tool for the spatial analysis of biological and related diversity. Ecography. Vol 33, 643-647 (Version 1.
  3 KB (329 words) - 21:03, 6 December 2019
• Cgmaptools
  ...es in SNV, ASM and DMR. Command-line Toolset for Bisulfite Sequencing Data Analysis
  2 KB (264 words) - 21:01, 6 December 2019
• Parabricks
  .... The core of the Parabricks software is its data pipeline which takes raw data and transforms it according to the user's requirements. # Set data directories
  4 KB (574 words) - 21:25, 14 December 2022

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