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• Hifiasm
  Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and
  3 KB (303 words) - 22:23, 27 August 2020
• YASRA
  YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, whi
  3 KB (304 words) - 20:56, 12 August 2022
• Wtdbg
  Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ON
  3 KB (310 words) - 17:44, 22 August 2022
• Oases
  Oases is a de novo transcriptome assembler designed to produce transcripts
  2 KB (293 words) - 17:25, 19 August 2022
• MIRA
  |{{#vardefine:url|http://mira-assembler.sourceforge.net/}} ...ble, CLR not yet. Please visit [http://sourceforge.net/apps/mediawiki/mira-assembler/ the app website] for more details.
  2 KB (313 words) - 20:42, 18 August 2022
• Miniasm
  Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by
  3 KB (306 words) - 20:10, 18 August 2022
• ALLPATHS-LG
  ALLPATHS-LG is a short read assembler. It has been designed to use reads
  2 KB (299 words) - 12:36, 12 August 2022
• Flye
  Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanop
  3 KB (317 words) - 21:20, 6 December 2019
• NextDenovo
  NextDenovo is a string graph-based de novo assembler for long reads (CLR, HiFi and ONT). It uses a "correct-then-assemble" strat
  3 KB (312 words) - 18:03, 10 May 2021
• IVA
  IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Ill
  2 KB (300 words) - 16:06, 7 December 2021
• ABySS
  ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful fo
  2 KB (315 words) - 16:17, 19 August 2022
• MarginPolish
  ...is also part of an assembly pipeline which includes an ultrafast nanopore assembler Shasta and a multi-task RNN polisher HELEN. HELEN operates on images genera
  3 KB (320 words) - 21:22, 6 December 2019
• DISCOVAR de novo
  DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimi
  3 KB (326 words) - 14:41, 15 August 2022
• AMOS
  ...resents our primary goal -- to produce A Modular, Open-Source whole genome assembler. Open-source so that everyone is welcome to contribute and help build outst
  3 KB (344 words) - 12:41, 12 August 2022
• MaSuRCA
  Zimin, A. et al. The MaSuRCA genome Assembler. Bioinformatics (2013). doi:10.1093/bioinformatics/btt476
  3 KB (340 words) - 18:24, 18 August 2022
• SHARCGS
  SHort-read Assembler based on Robust Contig-extension for Genomic Sequencing.
  3 KB (313 words) - 22:42, 21 August 2022
• Bridger
  Bridger is an efficient ''de novo'' transcriptome assembler for RNA-Seq data. It expects as input RNA-Seq reads (single or paired) in f
  3 KB (341 words) - 13:14, 15 August 2022
• Hapsembler
  Nilgun Donmez and Michael Brudno (2011) Hapsembler: an assembler for highly polymorphic genomes. In Proceedings of the 15th Annual internati
  3 KB (332 words) - 18:15, 15 August 2022
• IDBA-UD
  IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth. It is
  3 KB (354 words) - 18:40, 15 August 2022
• TriMetAss
  .... It uses Vmatch [2] to extend seed reads (or contigs generated by another assembler) into longer contigs, by iteratively calling Vmatch and Trinity, until some
  3 KB (344 words) - 20:52, 12 August 2022

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