Search results

• EIGENSOFT
  |{{#vardefine:url|http://genetics.med.harvard.edu/reich/Reich_Lab/Software.html}} ...ociation studies (EIGENSTRAT, Price et al. 2006) and to detect and analyze population structure (SMARTPCA, Patterson et al. 2006).
  3 KB (295 words) - 14:58, 15 August 2022
• 4p
  population genetics statistics from large SNPs dataset. ...articles/PMC4298444/pdf/ece30005-0172.pdf 4P: fast computing of population genetics statistics from large DNA polymorphism panels]
  2 KB (285 words) - 20:36, 11 August 2022
• PGDSpider
  ...Besides the conventional population genetics formats, PGDSpider integrates population genomics data formats commonly used to store and handle next-generation seq ...12) PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics 28: 298-299.]
  3 KB (387 words) - 19:04, 10 June 2022
• FastStructure
  A variational framework for inferring population structure from SNP genotype data. ...://rajanil.github.io/fastStructure/www.genetics.org/content/197/2/573.full Genetics], [http://rajanil.github.io/fastStructure/biorxiv.org/content/early/2013/12
  3 KB (297 words) - 18:54, 12 August 2022
• Baypass
  ...plicitly account for (and may estimate) the covariance structure among the population allele frequencies that originates from the shared history of the populatio ...erentiation and Association Analysis with population-specific covariables. Genetics, 201: 1555-1579.]
  3 KB (355 words) - 21:05, 6 December 2019
• MIGRATE-N
  ...te estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and diffe Missing population issues: Beerli 2004.
  5 KB (636 words) - 16:05, 22 December 2022
• Ibdne
  ...program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) se ...ation size from segments of identity by descent. American Journal of Human Genetics. In Press. doi:10.1016/j.ajhg.2015.07.012]
  3 KB (308 words) - 17:05, 27 May 2022
• Dadi
  ...s for population size and migration, plus the possibility of admixture and population-specific selection. ...aphic history of multiple populations from multidimensional SNP data" PLoS Genetics 5:e1000695 (2009).
  3 KB (350 words) - 21:21, 6 December 2019
• Graphtyper
  graphtyper is a graph-based variant caller capable of genotyping population-scale short read data sets. It represents a reference genome and known vari ...phtyper enables population-scale genotyping using pangenome graphs. Nature Genetics 49, 1654–1660 (2017). doi:10.1038/ng.3964]
  3 KB (373 words) - 15:43, 17 November 2021
• Alder
  ...ing Admixture Histories of Human Populations Using Linkage Disequilibrium. Genetics, 2013. ...ing Admixture Histories of Human Populations Using Linkage Disequilibrium. Genetics, 2013.
  3 KB (305 words) - 12:33, 12 August 2022
• Ngstools
  ngsTools is a collection of programs for population genetics analyses from NGS data, taking into account data statistical uncertainty. T * ngsTools: methods for population genetics analyses from next-generation sequencing data.Fumagalli M, Vieira FG, Linde
  5 KB (708 words) - 15:31, 14 December 2022
• LFMM
  ...LFMM computer program includes an integrated framework based on population genetics, ecological modeling and statistical techniques for screening genomes for s ...ed on a variant of Bayesian principal component analysis in which residual population structure is introduced via unobserved factors.
  3 KB (337 words) - 19:50, 15 August 2022
• TreeMix
  TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations. In the underlyi ...opulation splits and mixtures from genome-wide allele frequency data. PLoS Genetics.]
  3 KB (356 words) - 17:56, 10 June 2022
• Fastsimcoal
  ...and fission, admixture events, changes in migration matrix, or changes in population growth rates. The time of sampling can be specified independently for each .... Foll (2013) Robust demographic inference from genomic and SNP data. PLOS Genetics, 9(10):e1003905.]
  4 KB (481 words) - 15:25, 15 August 2022
• Msvar
  ...the Mark Beaumont's msvar software for statistical inference in population genetics and evolutionary biology.
  2 KB (260 words) - 13:35, 19 August 2022
• SMC++
  ...ence of population history from hundreds of unphased whole genomes. Nature Genetics, 49(2):303–309, 2017.]
  2 KB (268 words) - 23:52, 21 August 2022
• Genome STRiP
  ...n, such as a set of genomes from the 1000 Genomes Project. The background population does not need to be matched to the target individuals. Nature Genetics 47, 296-303 (2015)
  3 KB (446 words) - 19:28, 10 June 2022
• Package-GFE
  ...al high-throughput sequencing data for multiple diploid individuals from a population by a maximum-likelihood (ML) method. ...(2015) Genotype-frequency estimation from high-throughput sequencing data. Genetics (in press).
  2 KB (280 words) - 16:45, 10 June 2022
• Momi
  ...d sample frequency spectrum (SFS), a statistic commonly used in population genetics, and uses it to fit demographic history.
  3 KB (305 words) - 19:03, 4 April 2022
• BAPS
  to the population genetics context.
  3 KB (313 words) - 18:07, 12 August 2022

View (previous 20 | next 20) (20 | 50 | 100 | 250 | 500)