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CUDA Examples
===cuda_bm.c=== {{#fileAnchor: cuda_bm.c}}

12 KB (1,540 words) - 17:09, 21 December 2022
Rclone
c) Copy remote e/n/d/r/c/s/q> n

6 KB (763 words) - 20:07, 30 October 2023
Persistent Terminal Sessions
...eate as many terminal windows in the screen session as needed with 'Ctrl+a c' key combination. See [[Screen]] documentation. Ctrl+a c

4 KB (719 words) - 13:36, 2 January 2023
FFTW
Fastest Fourier Transform in the West, is a C library for computing the Discrete Fourier Transform (DFT) in one or more d

2 KB (223 words) - 16:41, 15 August 2022
Mach2VCF
Mach2VCF is a C++ tool to convert MaCH files to VCF files.

2 KB (242 words) - 14:49, 10 June 2022
Vcf-validator
Validation suite for Variant Call Format (VCF) files, implemented using C++11

2 KB (249 words) - 17:27, 22 August 2022
DosageConvertor
DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3 to ther format

2 KB (252 words) - 15:04, 10 June 2022
OpenSim
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

2 KB (247 words) - 17:57, 19 August 2022
OpenSlide
OpenSlide is a C library that provides a simple interface to read whole-slide images

2 KB (248 words) - 21:22, 6 December 2019
CellProfiler
...arch Computing. To run CellProfiler in batch mode, you should include the -c or --run-headless option. Also, you want to use CELLPROFILER_USE_XVFB="1" -c, --run-headless Run headless (without the GUI)

8 KB (910 words) - 21:29, 21 December 2022
Tbb
Widely used C++ template library for task parallelism.

2 KB (259 words) - 21:29, 6 December 2019
Talesf
TALESF is a C library for identifying potential binding sites for transcription activator

2 KB (256 words) - 21:29, 6 December 2019
Fastp
...e fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

2 KB (256 words) - 15:23, 15 August 2022
Glog
C++ implementation of the Google logging module

2 KB (269 words) - 17:10, 15 August 2022
Unanimity
C++ library and its applications to generate and process accurate consensus s

2 KB (268 words) - 17:48, 15 August 2022
GenomeTools
...nome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules.

2 KB (266 words) - 18:58, 12 August 2022
LEMON
Networks. It is a C++ template library providing efficient implementations

2 KB (268 words) - 15:41, 6 June 2022
Aster
...family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL).

2 KB (267 words) - 17:50, 28 August 2023
Libunistring
...t provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.

2 KB (269 words) - 15:49, 10 June 2022
IGoR
IGoR is a C++ software designed to infer V(D)J recombination related processes from seq

2 KB (271 words) - 13:52, 14 May 2020
Eagle-rc
...s.biomedcentral.com/articles/10.1186/s12920-018-0342-1 Tony Kuo and Martin C Frith and Jun Sese and Paul Horton. EAGLE: Explicit Alternative Genome Like

2 KB (270 words) - 22:30, 26 August 2020
QT
QT is a cross-platform application and UI framework for developers using C++ or QML, a CSS & JavaScript like language.

2 KB (257 words) - 20:57, 21 August 2022
MetaSV
...oup.com/bioinformatics/article/31/16/2741/321286 Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. W

2 KB (277 words) - 21:21, 6 December 2019
IMa2p
IMa2p is a parallel implementation of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under

2 KB (277 words) - 21:21, 6 December 2019
Phylonet
C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzi

2 KB (263 words) - 21:23, 6 December 2019
GLPK
...(MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.

2 KB (272 words) - 17:11, 15 August 2022
QD
...ead-safe, but, unlike MPFUN2020, is available with both a Fortran-90 and a C++ high-level interface.

2 KB (271 words) - 17:47, 15 August 2022
Deepsig
Savojardo C., Martelli P.L., Fariselli P., Casadio R. DeepSig: deep learning improves s

2 KB (266 words) - 04:24, 6 December 2022
NetCDF-C
|{{#vardefine:app|netcdf-c}}

2 KB (278 words) - 14:47, 19 August 2022
MiRanda
...finding genomic targets for microRNAs. This algorithm has been written in C and is available as an open-source method under the GPL. MiRanda was develo

2 KB (278 words) - 21:21, 6 December 2019
Rust
...both functional and imperative paradigms. Rust is syntactically similar to C++, but its designers intend it to provide better memory safety while still

2 KB (285 words) - 21:24, 6 December 2019
Grib api
The ECMWF GRIB API is an application program interface accessible from C,

2 KB (278 words) - 17:22, 15 August 2022
FastSpar
FastSpar is a c++ implementation of the SparCC algorithm published here: Friedman, J. & Alm

2 KB (283 words) - 15:26, 15 August 2022
AEGeAn
...ble programs as well as several data structures and modules callable via a C API.

2 KB (287 words) - 16:31, 10 June 2022
SNeP
SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories esti

2 KB (278 words) - 16:23, 10 June 2022
UDUNITS
1) a C library for units of physical quantities.

2 KB (279 words) - 17:17, 22 August 2022
RMATS turbo
rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net). The

2 KB (289 words) - 19:26, 2 June 2022
Gflags
The gflags package contains a C++ library that implements commandline flags processing. It includes built-i

2 KB (291 words) - 17:07, 15 August 2022
RMATS-turbo
rMATS turbo is the C/Cython version of rMATS (refer

2 KB (292 words) - 18:14, 8 March 2022
CGAL
and reliable geometric algorithms in the form of a C++ library.The Computational

2 KB (293 words) - 15:32, 6 June 2022
Gaussian GUI
**<pre>gui start -e gv -c 1 -m 8 -t 4</pre>

2 KB (341 words) - 19:17, 25 January 2023
SQANTI3
...i.nlm.nih.gov/pmc/articles/PMC5848618/ Tardaguila M, de la Fuente L, Marti C, et al. SQANTI: extensive characterization of long-read transcript sequence

2 KB (290 words) - 20:35, 27 May 2022
CGATools
...plete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include geno

2 KB (291 words) - 13:26, 15 August 2022
Blitz
Blitz++ is a C++ class library for scientific computing which provides performance on par

3 KB (303 words) - 21:19, 6 December 2019
TRITONSERVER
...rver. For edge deployments, Triton is available as a shared library with a C API that allows the full functionality of Triton to be included directly in

2 KB (298 words) - 20:06, 21 August 2022
CFITSIO
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexibl

2 KB (291 words) - 13:26, 15 August 2022
Bgenix
Bgenix is a reference implementation of the BGEN format, written in C++. The library can be used as the basis for BGEN support in other software,

2 KB (291 words) - 12:52, 15 August 2022
NCBI C++ Toolkit
NCBI C++ Toolkit provides free, portable, public domain libraries with no restrict

3 KB (306 words) - 14:25, 19 August 2022
Autometa
..., J.; Miller, I.; Baxa, J.; Lopera, J.; Kerby, R. L.; Rey, F. E.; Kwan, J. C. Autometa: Automated extraction of microbial genomes from individual shotgu

3 KB (300 words) - 21:19, 6 December 2019
Package-GFE
...and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for mult

2 KB (280 words) - 16:45, 10 June 2022

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