Search results

• TAU
  ...olkit for performance analysis of parallel programs written in Fortran, C, C++, Java, Python. ...h instrumentation of functions, methods, basic blocks, and statements. All C++ language features are supported including templates and namespaces. The A
  4 KB (581 words) - 22:37, 24 October 2022
• Segemehl
  Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermueller J: "F Hoffmann S, Otto C, Doose G, Tanzer A, Langenberger D, Christ S, Kunz M, Holdt L, Teupser D, H
  3 KB (406 words) - 22:30, 21 August 2022
• GDSL
  ...ary fully written from scratch in pure ANSI C. It is designed to offer for C programmers common data structures with powerful algorithms, and hidden imp
  3 KB (305 words) - 15:37, 6 June 2022
• Imagej2
  Rueden, C. T., Schindelin, J., Hiner, M. C., DeZonia, B. E., Walter, A. E., Arena, E. T., & Eliceiri, K. W. (2017). Im
  3 KB (308 words) - 16:31, 20 October 2022
• Allhic
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data ...embly of allele-aware, chromosomal scale autopolyploid genomes based on Hi-C data. Nature Plants, doi:10.1038/s41477-019-0487-8 (2019).
  3 KB (299 words) - 12:35, 12 August 2022
• KIM
  * C * C++
  3 KB (322 words) - 19:19, 15 August 2022
• Intel Compilers and Libraries
  | C || icc || ''icc compiler_options example.c'' | C++ || icpc || ''icpc compiler_options -o example.exe example.cxx''
  5 KB (612 words) - 18:04, 27 September 2023
• 3d-dna
  ...n: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. ...A.P., et al. (2017). De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science eaal3327. Published online ahea
  3 KB (328 words) - 17:51, 10 June 2022
• Minimac
  ...rnals.org/content/early/2014/10/22/bioinformatics.btu704.short Fuchsberger C, Abecasis GR, Hinds DA. minimac2: faster genotype imputation. Bioinformatic Howie B, Fuchsberger C, Stephens M, Marchini J, and Abecasis GR. Fast and accurate genotype imputa
  3 KB (332 words) - 20:11, 18 August 2022
• OpenCL
  ...evelopers can launch compute kernels written using a limited subset of the C programming language on a GPU. ...wget -q https://raw.github.com/smistad/OpenCL-Getting-Started/master/main.c
  3 KB (365 words) - 17:52, 19 August 2022
• SHARCGS
  Dohm JC, Lottaz C, Borodina T, Himmelbauer H SHARCGS, a fast and highly accurate short-read a Dohm JC, Lottaz C, Borodina T, Himmelbauer H Substantial biases in ultra-short read data sets
  3 KB (313 words) - 22:42, 21 August 2022
• PICRUSt
  ...le, D. E.; Vega Thurber, R. L.; Knight, R.; Beiko, R. G.; and Huttenhower, C. Nature Biotechnology, 1-10. 8 2013.]
  3 KB (344 words) - 18:28, 10 June 2022
• HOMER
  ...many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.
  3 KB (330 words) - 18:19, 15 August 2022
• Maq
  maqindex -i -c consensus.cns all.map; maqview -c consensus.cns all.map
  3 KB (377 words) - 19:47, 12 August 2022
• Phenix
  .... Moriarty, R. Oeffner, R. J. Read, D. C. Richardson, J. S. Richardson, T. C. Terwilliger and P. H. Zwart. Acta Cryst. D66, 213-221 (2010).
  3 KB (325 words) - 18:12, 21 August 2022
• Biolite
  BioLite is a bioinformatics framework written in Python/C++ that automates the collection and reporting of diagnostics, tracks proven * A C++ library 'seqio' for efficient I/O of large NGS data files
  3 KB (362 words) - 12:54, 15 August 2022
• BUCKy
  [http://mbe.oxfordjournals.org/content/24/2/412.abstract?etoc C. Ané, B. Larget, D.A. Baum, S.D. Smith, A. Rokas (2007). Bayesian estimati ...l.pdf?ijkey=BIwQBlPEqeEiojQ&keytype=ref B. Larget, S.K. Kotha, C.N. Dewey, C. Ané (2010). BUCKy: Gene tree / species tree reconciliation with the Bayes
  3 KB (386 words) - 13:15, 15 August 2022
• Elastix
  ...Elastix, making it available in languages like C++, Python, Java, R, Ruby, C# and Lua.
  3 KB (365 words) - 15:30, 3 June 2022
• Mamba
  Mamba is a reimplementation of the conda package manager in C++. core parts of mamba are implemented in C++ for maximum efficiency
  3 KB (429 words) - 20:16, 3 June 2022
• Genesis
  1. C. Kobayashi, J. Jung, Y. Matsunaga, T. Mori, T. Ando, K. Tamura, M. Kamiya, 2. J. Jung, T. Mori, C. Kobayashi, Y. Matsunaga, T. Yoda, M. Feig, and Y. Sugita, WIREs Comput. Mo
  3 KB (368 words) - 17:51, 3 April 2024
• ChartDirector
  VBScript, VBA, JavaScript, .NET (C#/VB), Java, JSP, C++, PHP, Perl, Python,
  3 KB (397 words) - 13:26, 15 August 2022
• USEARCH
  Edgar, Robert C. - Search and clustering orders of magnitude faster than BLAST Author : Edgar, Robert C.
  4 KB (559 words) - 17:19, 22 August 2022
• PICSL
  [1] H. Wang, J. W. Suh, S. Das, J. Pluta, C. Craige, P. Yushkevich, "Multi-atlas segmentation [2] H. Wang, S. R. Das, J. W. Suh, M. Altinay, J. Pluta, C. Craige, B. B. Avants, and P. A. Yushkevich,
  3 KB (390 words) - 20:31, 24 August 2022
• SLURM Environmental Variables
  ...Number of cores per task. I.e., the value given to the -cpus-per-task or -c sbatch options. Not set unless one of those options given.
  1 KB (236 words) - 17:43, 5 March 2024
• CASM
  [ref2] J. C. Thomas, A. Van der Ven, Finite-temperature properties of strongly anharmon [ref4] A. Van der Ven, J. C. Thomas, Q. Xu, J. Bhattacharya “Linking the electronic structure of soli
  4 KB (453 words) - 13:20, 15 August 2022
• EDTA
  ...J., Lugo C. S. B., Elliott T. A., Ware D., Peterson T., Jiang N.✉, Hirsch C. N.✉ and Hufford M. B.✉ (2019). Benchmarking Transposable Element Annot
  4 KB (474 words) - 21:27, 14 September 2023
• LAMMPS
  ...liquid, solid, or gaseous state. It is a open source software, written in C++ and developed at Sandia laboratory. It can be used to model atomic, polym ...CMAKE_INSTALL_PREFIX=<target_lammps_dir> -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake ../cmake
  5 KB (731 words) - 20:30, 6 April 2024
• Account and QOS limits under SLURM
  #Looks good, let's terminate the request with Ctrl+C> ^C
  8 KB (1,354 words) - 18:36, 9 February 2024
• AMBER
  ...Cheatham, III, T. Darden, H. Gohlke, R. Luo, K.M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang and R. Woods. The Amber biomolecular simulation progra ...-J. Hsieh, G. Cui, D.R. Roe, D.H. Mathews, M.G. Seetin, R. Salomon-Ferrer, C. Sagui, V. Babin, T. Luchko, S. Gusarov, A. Kovalenko, and P.A. Kollman (20
  5 KB (736 words) - 20:09, 5 February 2024
• Tensorboard
  ...orBoard 2.4.0 at '''<nowiki>http://localhost:6006/</nowiki>''' (Press CTRL-C to quit)
  2 KB (231 words) - 21:03, 12 December 2023
• CUDA Examples
  ===cuda_bm.c=== {{#fileAnchor: cuda_bm.c}}
  12 KB (1,540 words) - 17:09, 21 December 2022
• Rclone
  c) Copy remote e/n/d/r/c/s/q> n
  6 KB (763 words) - 20:07, 30 October 2023
• Persistent Terminal Sessions
  ...eate as many terminal windows in the screen session as needed with 'Ctrl+a c' key combination. See [[Screen]] documentation. Ctrl+a c
  4 KB (719 words) - 13:36, 2 January 2023
• FFTW
  Fastest Fourier Transform in the West, is a C library for computing the Discrete Fourier Transform (DFT) in one or more d
  2 KB (223 words) - 16:41, 15 August 2022
• Mach2VCF
  Mach2VCF is a C++ tool to convert MaCH files to VCF files.
  2 KB (242 words) - 14:49, 10 June 2022
• Vcf-validator
  Validation suite for Variant Call Format (VCF) files, implemented using C++11
  2 KB (249 words) - 17:27, 22 August 2022
• DosageConvertor
  DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3 to ther format
  2 KB (252 words) - 15:04, 10 June 2022
• OpenSim
  SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
  2 KB (247 words) - 17:57, 19 August 2022
• OpenSlide
  OpenSlide is a C library that provides a simple interface to read whole-slide images
  2 KB (248 words) - 21:22, 6 December 2019
• CellProfiler
  ...arch Computing. To run CellProfiler in batch mode, you should include the -c or --run-headless option. Also, you want to use CELLPROFILER_USE_XVFB="1" -c, --run-headless Run headless (without the GUI)
  8 KB (910 words) - 21:29, 21 December 2022
• Tbb
  Widely used C++ template library for task parallelism.
  2 KB (259 words) - 21:29, 6 December 2019
• Talesf
  TALESF is a C library for identifying potential binding sites for transcription activator
  2 KB (256 words) - 21:29, 6 December 2019
• Fastp
  ...e fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
  2 KB (256 words) - 15:23, 15 August 2022
• Glog
  C++ implementation of the Google logging module
  2 KB (269 words) - 17:10, 15 August 2022
• Unanimity
  C++ library and its applications to generate and process accurate consensus s
  2 KB (268 words) - 17:48, 15 August 2022
• GenomeTools
  ...nome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules.
  2 KB (266 words) - 18:58, 12 August 2022
• LEMON
  Networks. It is a C++ template library providing efficient implementations
  2 KB (268 words) - 15:41, 6 June 2022
• Aster
  ...family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL).
  2 KB (267 words) - 17:50, 28 August 2023
• Libunistring
  ...t provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
  2 KB (269 words) - 15:49, 10 June 2022
• IGoR
  IGoR is a C++ software designed to infer V(D)J recombination related processes from seq
  2 KB (271 words) - 13:52, 14 May 2020

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