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  • Category:Visualization
    Tools for data visualization.
    19 members (0 subcategories, 0 files) - 14:53, 19 August 2022

Page text matches

  • Category:Visualization
    Tools for data visualization.
    19 members (0 subcategories, 0 files) - 14:53, 19 August 2022
  • VTK
    ..., contouring, and Delaunay triangulation. VTK has an extensive information visualization framework, has a suite of 3D interaction widgets, supports parallel process
    3 KB (360 words) - 20:55, 12 August 2022
  • ViewBS
    ...level commands can be divided into two parts: methylation report and data visualization of functional regions. The part of visualization for functional regions also has several different top commands. For ViewBS,
    3 KB (384 words) - 17:30, 22 August 2022
  • Ggsashimi
    Command-line tool for the visualization of splicing events across multiple samples ...himi: Sashimi plot revised for browser-and annotation-independent splicing visualization. PLoS computational biology, 14(8), e1006360.]
    2 KB (275 words) - 16:38, 27 May 2022
  • Eddy-squeeze
    [[Category:Visualization]] ...he signal replacements by FSL Eddy with --repol option. In addition to the visualization, it also collects measures like motions, number of outliers and post-eddy t
    2 KB (280 words) - 14:12, 21 October 2022
  • GraphViz
    Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract gra
    2 KB (276 words) - 19:03, 12 August 2022
  • ETE3
    ...gy and paralogy detection. In addition, ETE implements an interactive tree visualization system as well as a highly customizable tree drawing engine to create PDF a ...content/early/2016/03/21/molbev.msw046 ETE 3: Reconstruction, analysis and visualization of phylogenomic data. Jaime Huerta-Cepas, Francois Serra and Peer Bork. Mol
    3 KB (400 words) - 19:13, 10 June 2022
  • VMD
    [[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] VMD is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid
    3 KB (384 words) - 17:33, 22 August 2022
  • Visit
    [[Category:Software]][[Category:Visualization]][[Category:Animation]] ...ting images and animations for presentations. VisIt contains a rich set of visualization features to enable users to view a wide variety of data including scalar an
    3 KB (403 words) - 14:47, 15 March 2024
  • Intervene
    Intervene: a tool for intersection and visualization of multiple genomic region and gene sets http://intervene.rtfd.io/ ...859-017-1708-7 Khan A, Mathelier A. Intervene: a tool for intersection and visualization of multiple gene or genomic region sets. BMC Bioinformatics. 2017;18:287. d
    3 KB (295 words) - 21:21, 6 December 2019
  • Chimera
    UCSF Chimera is a highly extensible program for interactive visualization Chimera is developed by the Resource for Biocomputing, Visualization, and
    3 KB (296 words) - 18:27, 12 August 2022
  • PacMAP
    ...d Approximation) is a dimensionality reduction method that can be used for visualization, preserving both local and global structure of the data in original space. ...Empirical Approach to Deciphering t-SNE, UMAP, TriMap, and PaCMAP for Data Visualization. Journal of Machine Learning Research. 2021. 22. 201. 1-73. http://jmlr.org
    3 KB (304 words) - 18:24, 11 February 2023
  • Computer Vision
    = Modules for Visualization Toolkit = ...ic visualization. It has a client–server architecture to facilitate remote visualization of datasets, and generates level of detail models to maintain interactive f
    4 KB (563 words) - 20:59, 21 December 2022
  • Circleator
    The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool developed at the Institute for Genome Sciences in the University of Ma ..., Myers, G.S., Rasko, D.A., White, O. (2014) Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG. Bioinformatics, 10.1093/bio
    3 KB (319 words) - 21:18, 6 December 2019
  • Cytoscape
    ...ution provides a basic set of features for data integration, analysis, and visualization.
    3 KB (334 words) - 14:23, 15 August 2022
  • PyVista
    ...age provides a Pythonic, well-documented interface exposing VTK’s powerful visualization backend to facilitate rapid prototyping, analysis, and visual integration o
    3 KB (344 words) - 13:56, 25 September 2020
  • Gephi
    [[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.
    3 KB (337 words) - 17:42, 11 January 2023
  • Ferret
    [[Category:Software]][[Category: Geospatial]][[Category:Climate]][[Category:Visualization]][[Category:Data Science]] Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and m
    3 KB (359 words) - 20:26, 24 August 2022
  • AFNI
    RW Cox. AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages. Computers and Biomedical Rese RW Cox and JS Hyde. Software tools for analysis and visualization of FMRI Data. NMR in Biomedicine, 10:171-178, 1997.
    3 KB (363 words) - 20:52, 11 August 2022
  • Artemis
    Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Artemis: sequence visualization and annotation.
    3 KB (378 words) - 14:53, 12 August 2022
  • Whiteboxtools
    ...kage; instead it is meant to serve as an analytical backend for other data visualization software, mainly GIS.
    3 KB (408 words) - 17:43, 22 August 2022
  • P4vasp
    [[Category:Software]][[Category:Visualization]]
    2 KB (230 words) - 18:01, 19 August 2022
  • Anvio
    Anvio is an analysis and visualization platform for ‘omics data.
    2 KB (237 words) - 14:20, 12 August 2022
  • VARI
    [[Category:Software]][[Category:math]][[Category:visualization]]
    2 KB (248 words) - 14:10, 11 October 2022
  • Bamsnap
    BamSnap: a lightweight command-based visualization tool for sequencing reads in BAM files
    2 KB (248 words) - 16:14, 27 May 2022
  • Simulia
    [[Category:Software]][[Category:Simulation]][[Category:Visualization]]
    2 KB (252 words) - 18:23, 1 June 2022
  • MAGeCK-VISPR
    MAGeCK-VISPR is a comprehensive quality control, analysis and visualization pipeline for CRISPR/Cas9 screens build on top of MAGeCK and VISPR.
    2 KB (251 words) - 20:21, 26 May 2022
  • Squigglekit
    [[Category:Software]][[Category:Visualization]][[Category:Biology]]
    2 KB (254 words) - 15:55, 22 August 2022
  • Data Science Platform
    ...ite of tools and packages for data manipulation, statistical modeling, and visualization, making it ideal for tasks ranging from simple data analysis to complex pre ...ts robust capabilities in numerical and matrix calculations, advanced data visualization, and the development of algorithms. It is particularly useful for applicati
    5 KB (669 words) - 17:22, 10 May 2024
  • FFmpeg
    [[Category:Software]][[Category:Audio]][[Category:Visualization]]
    2 KB (252 words) - 16:41, 15 August 2022
  • Schrodinger Suite
    ...m small molecule modelling to advanced pharmaceutical research, as well as visualization and automation tools.
    2 KB (257 words) - 15:30, 19 August 2022
  • GATE
    ...validated physics models, sophisticated geometry description, and powerful visualization and 3D rendering tools with original features specific to emission tomograp
    2 KB (264 words) - 19:51, 10 June 2022
  • TAU
    ...nt traces that can be displayed with the Vampir, Paraver or JumpShot trace visualization tools.
    4 KB (581 words) - 22:37, 24 October 2022
  • VISPR
    VISPR - A visualization framework for CRISPR data.
    2 KB (261 words) - 15:53, 21 June 2023
  • TPP
    ...s-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to our open mzXML format.
    2 KB (266 words) - 20:22, 24 August 2022
  • Trgt
    ...ylation of each analyzed repeat. TRGT comes with a companion tool TRVZ for visualization of reads overlapping the repeats.
    2 KB (273 words) - 14:45, 28 July 2023
  • Trvz
    TRVZ is a companion tool with TRGT for visualization of reads overlapping the repeats. TRGT is a tool for targeted genotyping of
    2 KB (273 words) - 14:46, 28 July 2023
  • Sc-im
    [[Category:Software]][[Category:Visualization]][[Category:Utility]]
    2 KB (272 words) - 22:07, 21 August 2022
  • IGV
    The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It
    2 KB (276 words) - 18:42, 15 August 2022
  • Mosaic
    ...y and tertiary analysis. Its core idea is to allow convenient handling and visualization of single-cell data to enable exploratory analysis.
    2 KB (282 words) - 14:15, 14 October 2021
  • Pplacer
    ...fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis.
    2 KB (282 words) - 15:45, 19 August 2022
  • Pggb
    ...ariation. Maintaining local linearity is important for the interpretation, visualization, and reuse of pangenome variation graphs.
    2 KB (287 words) - 19:56, 6 November 2020
  • Textract
    ...called “dark data”—that would be valuable for further textual analysis and visualization. While several packages exist for extracting content from each of these for
    3 KB (304 words) - 13:55, 21 October 2022
  • Processing
    [[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Visualization]]
    2 KB (285 words) - 12:12, 26 August 2022
  • Workbench
    ...n user interface for model creation, review, execution, output review, and visualization for integrated codes.
    2 KB (286 words) - 15:34, 19 August 2022
  • Fit-sne
    ...ing (t-SNE) is a highly successful method for dimensionality reduction and visualization of high dimensional datasets. A popular implementation of t-SNE uses the Ba
    2 KB (287 words) - 16:34, 27 May 2022
  • Imaginaire
    [[Category:Visualization]]
    3 KB (302 words) - 17:55, 15 August 2022
  • Asap
    [[Category:Software]][[Category:Visualization]][[Category:Biology]]
    3 KB (295 words) - 17:29, 9 June 2022
  • CViT
    [https://www.hindawi.com/journals/ijpg/2011/373875/ Chromosome Visualization Tool: A Whole Genome Viewer]
    2 KB (294 words) - 12:09, 26 August 2022
  • DiscoVista
    DiscoVista (Discordance Visualization Tool) is a command-line software package for visualizing phylogenetic disco
    3 KB (291 words) - 19:00, 28 January 2020

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