Search results

• HASLR
  ...long reads generated by Third Generation Sequencing technologies (such as PacBio or Oxford Nanopore) together with Next Generation Sequencing reads (such as
  3 KB (315 words) - 19:53, 17 August 2020
• Flye
  ...is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to f
  3 KB (317 words) - 21:20, 6 December 2019
• Mitohifi
  MitoHiFi is a python workflow that assembles mitogenomes from Pacbio HiFi reads.
  3 KB (312 words) - 17:01, 21 July 2022
• NextDenovo
  ...a "correct-then-assemble" strategy similar to canu (no correction step for PacBio Hifi reads), but requires significantly less computing resources and storag
  3 KB (312 words) - 18:03, 10 May 2021
• Quickmerge
  ...na short reads are not typically considered to cover genomic regions which PacBio and ONP long reads cannot. For more details, please see the paper that desc
  3 KB (325 words) - 21:24, 6 December 2019
• PBJelly
  (such a PacBio RS reads or long 454 reads in fasta format) to high-confidence
  3 KB (309 words) - 17:07, 21 August 2022
• MetaMaps
  MetaMaps is tool specifically developed for the analysis of long-read (PacBio/Oxford Nanopore) metagenomic datasets.
  3 KB (322 words) - 19:25, 14 December 2021
• SMRT-SV
  SMRT-SV calls structural variants (SVs) using long reads (PacBio RS II or Sequel). The input is an FOFN file that lists each input file (BAX
  3 KB (340 words) - 00:03, 22 August 2022
• Talon
  ...mapped SAM files, allowing data from different sequencing platforms (i.e. PacBio and Oxford Nanopore) to be analyzed side by side.
  3 KB (321 words) - 15:13, 23 September 2022
• Fastv
  ...tool supports both short reads (Illumina, BGI, etc.) and long reads (ONT, PacBio, etc.)
  3 KB (327 words) - 20:08, 19 April 2024
• TGSGapCloser
  ...error-prone long reads generated by third-generation-sequence techniques (Pacbio, Oxford Nanopore, etc.) or preassembled contigs to fill N-gap in the genome
  3 KB (321 words) - 15:35, 20 April 2021
• BBMap
  ...ng arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and num
  3 KB (349 words) - 17:55, 10 June 2022
• Counterr
  ...general and applicable to other sequencing platforms such as Illumina and PacBio.
  3 KB (342 words) - 21:15, 6 December 2019
• Smalt
  example Illumina, Roche-454, Ion Torrent, PacBio or ABI-Sanger. Paired reads
  3 KB (342 words) - 17:24, 3 June 2022
• Hiphase
  HiPhase will phase variant calls made from PacBio HiFi datasets. Key features relative to other phasing tools include:
  3 KB (337 words) - 20:21, 19 March 2024
• Jasper
  ...is an efficient polishing tool for draft genomes. It uses accurate reads (PacBio HiFi or Illumina) to evaluate consensus quality and correct consensus error
  3 KB (354 words) - 16:42, 14 December 2023
• Canu
  ...Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION).
  3 KB (358 words) - 14:26, 14 April 2020
• Longshot
  ...diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). It takes as input an aligned
  3 KB (352 words) - 20:04, 26 July 2023
• ABruijn
  ABruijn is a ''de novo'' assembler for PacBio and Oxford Nanopore Technologies reads. The algorithm uses an A-Bruijn grap
  3 KB (354 words) - 20:09, 24 August 2022
• Svim
  ...le insertions. In our experiments on simulated data and real datasets from PacBio and Nanopore sequencing machines, SVIM reached consistently better results
  3 KB (358 words) - 17:14, 31 May 2022

View (previous 20 | next 20) (20 | 50 | 100 | 250 | 500)