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• JCVI
  Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly,
  2 KB (265 words) - 14:30, 4 September 2020
• Pyhdf
  * HPC_{{uc:{{#var:app}}}}_LIB - libraries directory
  2 KB (267 words) - 15:25, 3 June 2022
• Pvconv
  some programs including the converter, and libraries supporting reads
  2 KB (265 words) - 21:12, 24 October 2022
• CDNA Cupcake
  ...of the scripts only require Biopython. For scripts that require additional libraries, it will be specified in documentation.
  2 KB (276 words) - 13:24, 15 August 2022
• GenomicNeuralnet
  This python code leverages the pybrain and scikit-learn libraries, as well as a built-in artifical neural network implementation to perform g
  2 KB (270 words) - 22:09, 27 August 2020
• NetCDF-C
  NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the crea
  2 KB (278 words) - 14:47, 19 August 2022
• SimSeq
  ...l for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries.
  2 KB (283 words) - 22:59, 21 August 2022
• Intel MPI
  This module enables the use of the Intel MPI libraries and tools built with
  3 KB (297 words) - 12:01, 26 August 2022
• MCR
  The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on
  2 KB (292 words) - 18:06, 3 June 2022
• Preseq
  ...f further sequencing, optimize the sequencing depth, or to screen multiple libraries to avoid low complexity samples.
  3 KB (303 words) - 20:26, 12 August 2022
• PRINSEQ++
  ...e.pl and uses less RAM thanks to the use of multi-threading and the cboost libraries. It can read and write compressed (gzip) files, drastically reducing the us
  2 KB (298 words) - 18:11, 15 April 2020
• Radorgminer
  ...is designed to genotype sequence tags found in reduced genomic complexity libraries that originate from the organellar genome(s).
  3 KB (297 words) - 21:55, 6 July 2022
• Rrnaselector
  ...prokaryotic rRNA sequences from metagenomic and metatrancriptomic shotgun libraries. The rRNASelector selects both bacterial and archaeal rRNA genes (5S, 16S a
  3 KB (304 words) - 21:24, 6 December 2019
• PHYUTILITY
  ...ations on both trees and data matrices. Makes use of JADE (PEBLS) and JEBL libraries.
  2 KB (296 words) - 20:22, 12 August 2022
• Mitsuba2
  ...ering system written in portable C++17. It consists of a small set of core libraries and a wide variety of plugins that implement functionality ranging from mat
  3 KB (302 words) - 20:45, 18 August 2022
• MPACK
  ...nd LAPACK, respectively. It supports various multiple precision arithmetic libraries like GMP, MPFR, and QD, as well as IEEE 754 binary128 (via gcc's extension
  3 KB (307 words) - 17:03, 10 June 2022
• DCMTK
  DCMTK is a collection of libraries and applications implementing large parts the DICOM standard. It includes s
  3 KB (304 words) - 20:31, 10 June 2022
• STAR-Fusion
  Reference genome libraries are located in the <code>$HPC_STARFUSION_REF</code> directory. Use them lik
  3 KB (306 words) - 16:02, 22 August 2022
• CellRanger
  ...perform clustering and gene expression analysis. Cell Ranger 1.2 supports libraries generated by the Chromium Single Cell 3' v1 and v2 reagent kits.
  2 KB (294 words) - 18:24, 12 August 2022
• GNU Compiler Collection
  ...front ends for C, C++, Objective-C, Fortran, Java, Ada, and Go, as well as libraries for these languages (libstdc++, libgcj,...). GCC was originally written as
  2 KB (298 words) - 20:44, 15 August 2022

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