Search results

• Mosaic
  ...nient handling and visualization of single-cell data to enable exploratory analysis.
  2 KB (282 words) - 14:15, 14 October 2021
• ClonalFrame
  ClonalFrame can be applied to any kind of sequence data, from a fragment of DNA to whole genomes. It is well suited for the analysis of MLST
  3 KB (349 words) - 18:33, 12 August 2022
• MOABS
  ...cient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing. ...le and differential methylation for multiple samples, and other downstream analysis.
  2 KB (291 words) - 19:53, 12 August 2022
• SeqyClean
  ...ary preparation. Such nucleotides can potentially case hurdles during data analysis and hereby need to be removed. In additional, the noise, which is presented
  3 KB (312 words) - 22:41, 21 August 2022
• AFNI
  ...C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity. It should be used for resea RW Cox. AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages. Computers a
  3 KB (363 words) - 20:52, 11 August 2022
• QAPA
  Analysis of alternative polyadenylation (APA) from RNA-seq data (human and mouse). QAPA consists of two main components: ...od for the systematic analysis of alternative polyadenylation from RNA-seq data. Genome Biol. 19, 45.]
  3 KB (305 words) - 16:54, 15 January 2021
• Nsight
  ...egory:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]] ...based analysis scripts for post-processing results. The rules-based guided analysis helps isolate and fix memory throughput, compute, and occupancy inefficienc
  3 KB (316 words) - 20:39, 24 August 2022
• FSL
  ...omprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. ..., C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-86, 2009
  3 KB (365 words) - 16:47, 17 January 2023
• ETE3
  ...c analysis, it can also be used to deal with clustering trees or any other data that can be represented as a hierarchical tree. ...v.msw046 ETE 3: Reconstruction, analysis and visualization of phylogenomic data. Jaime Huerta-Cepas, Francois Serra and Peer Bork. Mol Biol Evol 2016; doi:
  3 KB (400 words) - 19:13, 10 June 2022
• SPM
  ...ded statistical processes used to test hypotheses about functional imaging data. These ideas have been instantiated in software that is called SPM. ...time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG.
  3 KB (327 words) - 17:00, 13 February 2024
• Nimare
  ...for performing meta-analyses, and derivative analyses using meta-analytic data, of the neuroimaging literature. While meta-analytic packages exist which i ...ng (MACM) analysis, peaks2maps image reconstruction, and contrast map meta-analysis. '''Each workflow should generate a boilerplate paragraph with details abou
  3 KB (343 words) - 15:27, 15 August 2022
• TrackVis/DTK
  TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imaging (DTI/DSI/HARDI/Q-Ball) tractography. Features of ...ormat of the track data file allowing users to integrate customized scalar data into the track file and visualize and analyze it. Save and restore scenes i
  3 KB (418 words) - 14:56, 18 October 2022
• Methylpy
  Methylpy, a pyhton-based analysis pipeline for (single-cell) (whole-genome) bisulfite sequencing data
  3 KB (309 words) - 21:21, 6 December 2019
• NONMEM
  ...effects modelling tool used in population pharmacokinetic/pharmacodynamic analysis. ...in previous versions. NONMEM® can be used to simulate data as well as fit data.
  3 KB (439 words) - 21:23, 6 December 2019
• Ovito
  * automate simulation post-processing, visualization, and data analysis tasks, * integrate OVITO’s file I/O, data analysis, and rendering capabilities into custom workflows and external Python progr
  3 KB (333 words) - 15:29, 1 December 2023
• Cytoscape
  ...e core distribution provides a basic set of features for data integration, analysis, and visualization.
  3 KB (334 words) - 14:23, 15 August 2022
• Garfield
  ...y or functional annotations (primarily from ENCODE and Roadmap epigenomics data) to find features relevant to a phenotype of interest. ...0K Consortium, Ian Dunham, Ewan Birney and Nicole Soranzo. GARFIELD - GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction. doi:
  3 KB (342 words) - 22:51, 30 November 2022
• MEGAN
  ...Nalyzer) is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools * Taxonomic analysis using the NCBI taxonomy or a customized taxonomy such as SILVA
  3 KB (338 words) - 15:38, 15 April 2024
• Plink
  PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a co ...(e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for
  3 KB (342 words) - 20:25, 12 August 2022
• MitoPhAST
  ...tics bottleneck in preparing and utilising such data for phylogenetic data analysis. We present, MitoPhAST, an automated tool that: ...ncorporates nuclear gene sequences (if supplied by user) into phylogenetic analysis.
  3 KB (382 words) - 14:27, 23 April 2020

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