Difference between revisions of "LCModel"

Revision as of 22:05, 21 February 2022

Description

LCModel website

The LCModel package is for the automatic quantitation of in vivo proton MR spectra.

Environment Modules

Run module spider LCModel to find out what environment modules are available for this application.

System Variables

HPC_LCMODEL_DIR - installation directory

Additional Information

Due to this application's design, HiperGator does not longer support module maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-test.shtml. For GUI use, follow instructions from an Open OnDemand terminal.

Manual:

http://s-provencher.com/pub/LCModel/manual/manual.pdf

Example control file ("test.control"):

$LCMODL
OWNER='Biomedizinische NMR Forschungs GmbH, Goettingen'
KEY(1)=0
TITLE='FIGURE 1:  Test Data (white matter, 2.0 T, STEAM, TE/TM=20/30 ms).'
ratipm = 2.0
ltable=7, filtab='/data/apps/tests/lcmodel/output/test.table'
lprint=6, filpri='/data/apps/tests/lcmodel/output/test.dump'
FILBAS='/data/apps/tests/lcmodel/output/test.basis'
FILRAW='/data/apps/tests/lcmodel/raw/test.RAW'
FILPS='/data/apps/tests/lcmodel/test.ps'
nameac(2)='NAAG'
neach=2  nameac(1)='NAA'
NUNFIL=2048, DELTAT=.0005
HZPPPM=84.47
$END

Tested using:

$ lcmodel < ./test.control

@@ Line 32: / Line 32: @@
 <!--Run-->
 {{#if: {{#var: exe}}|==Additional Information==
+{{note|Due to this application's design, HiperGator does not longer support module maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-test.shtml. For GUI use, follow instructions from an Open OnDemand terminal.}}
 ===Manual:===