Difference between revisions of "EggNOG-mapper"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|eggnog-mapper}} |{{#vardefine:url|https://github.com/eggnogdb/eggnog-mapper}...") |
Johnbullard (talk | contribs) (Updated citations) |
||
| Line 10: | Line 10: | ||
|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
|} | |} | ||
| Line 60: | Line 60: | ||
If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | [https://doi.org/10. | + | Please cite the following two papers if you use eggNOG-mapper v2: |
| + | |||
| + | [1] eggNOG-mapper v2: functional annotation, orthology assignments, and domain | ||
| + | prediction at the metagenomic scale. Carlos P. Cantalapiedra, | ||
| + | Ana Hernandez-Plaza, Ivica Letunic, Peer Bork, Jaime Huerta-Cepas. | ||
| + | biorxiv (2021). doi: https://doi.org/10.1101/2021.06.03.446934 | ||
| + | [2] eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated | ||
| + | orthology resource based on 5090 organisms and 2502 viruses. Jaime | ||
| + | Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia | ||
| + | K Forslund, Helen Cook, Daniel R Mende, Ivica Letunic, Thomas Rattei, Lars | ||
| + | J Jensen, Christian von Mering, Peer Bork Nucleic Acids Res. 2019 Jan 8; | ||
| + | 47(Database issue): D309–D314. doi: 10.1093/nar/gky1085 | ||
|}} | |}} | ||
Revision as of 19:28, 6 December 2021
Description
eggNOG-mapper is a tool for fast functional annotation of novel sequences. It uses precomputed orthologous groups and phylogenies from the eggNOG database to transfer functional information from fine-grained orthologs only.
Environment Modules
Run module spider eggnog-mapper to find out what environment modules are available for this application.
System Variables
- HPC_EGGNOG-MAPPER_DIR - installation directory
- HPC_EGGNOG-MAPPER_BIN - executable directory
Citation
If you publish research that uses eggnog-mapper you have to cite it as follows:
Please cite the following two papers if you use eggNOG-mapper v2:
[1] eggNOG-mapper v2: functional annotation, orthology assignments, and domain
prediction at the metagenomic scale. Carlos P. Cantalapiedra,
Ana Hernandez-Plaza, Ivica Letunic, Peer Bork, Jaime Huerta-Cepas.
biorxiv (2021). doi: https://doi.org/10.1101/2021.06.03.446934
[2] eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated
orthology resource based on 5090 organisms and 2502 viruses. Jaime
Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia
K Forslund, Helen Cook, Daniel R Mende, Ivica Letunic, Thomas Rattei, Lars
J Jensen, Christian von Mering, Peer Bork Nucleic Acids Res. 2019 Jan 8;
47(Database issue): D309–D314. doi: 10.1093/nar/gky1085