Difference between revisions of "Hapbin"
Jump to navigation
Jump to search
Johnbullard (talk | contribs) (Created page with "Category:Software Category:Biology Category:Genetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|hapbin}} |{{#vardefine:url|https://github.com/evotools/hapb...") |
|||
| Line 1: | Line 1: | ||
[[Category:Software]] | [[Category:Software]] | ||
[[Category:Biology]] | [[Category:Biology]] | ||
| − | [[Category: | + | [[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|hapbin}} | |{{#vardefine:app|hapbin}} | ||
Latest revision as of 18:12, 15 August 2022
Description
hapbin is a collection of tools for efficiently calculating Extended Haplotype Homozygosity (EHH), the Integrated Haplotype Score (iHS) and the Cross Population Extended Haplotype Homozogysity (XP-EHH) statistic.
Environment Modules
Run module spider hapbin to find out what environment modules are available for this application.
System Variables
- HPC_HAPBIN_DIR - installation directory
- HPC_HAPBIN_BIN - executable directory
Citation
If you publish research that uses hapbin you have to cite it as follows:
Maclean CA, Chue Hong NP, Prendergast JG. hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets. Mol Biol Evol. 2015 Nov;32(11):3027-9. doi: 10.1093/molbev/msv172