Difference between revisions of "EggNOG-mapper"

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|{{#vardefine:citation|1}}      <!--CITATION-->
 
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
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* EGGNOG_DATA_DIR - application databases directory
  
 
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If you publish research that uses {{#var:app}} you have to cite it as follows:
 
If you publish research that uses {{#var:app}} you have to cite it as follows:
  
[https://doi.org/10.1093/molbev/msx148 Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper. Jaime Huerta-Cepas, Kristoffer Forslund, Luis Pedro Coelho, Damian Szklarczyk, Lars Juhl Jensen, Christian von Mering and Peer Bork. Mol Biol Evol (2017)]
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Please cite the following two papers if you use eggNOG-mapper v2:
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 +
[1] eggNOG-mapper v2: functional annotation, orthology assignments, and domain                                                                       
 +
      prediction at the metagenomic scale. Carlos P. Cantalapiedra,                                                                                   
 +
      Ana Hernandez-Plaza, Ivica Letunic, Peer Bork, Jaime Huerta-Cepas.                                                                             
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      biorxiv (2021). doi: https://doi.org/10.1101/2021.06.03.446934
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[2] eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated
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      orthology resource based on 5090 organisms and 2502 viruses. Jaime
 +
      Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia
 +
      K Forslund, Helen Cook, Daniel R Mende, Ivica Letunic, Thomas Rattei, Lars
 +
      J Jensen, Christian von Mering, Peer Bork Nucleic Acids Res. 2019 Jan 8;
 +
      47(Database issue): D309–D314. doi: 10.1093/nar/gky1085
  
 
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Latest revision as of 19:29, 6 December 2021

Description

eggnog-mapper website  

eggNOG-mapper is a tool for fast functional annotation of novel sequences. It uses precomputed orthologous groups and phylogenies from the eggNOG database to transfer functional information from fine-grained orthologs only.

Environment Modules

Run module spider eggnog-mapper to find out what environment modules are available for this application.

System Variables

  • HPC_EGGNOG-MAPPER_DIR - installation directory
  • HPC_EGGNOG-MAPPER_BIN - executable directory
  • EGGNOG_DATA_DIR - application databases directory




Citation

If you publish research that uses eggnog-mapper you have to cite it as follows:

Please cite the following two papers if you use eggNOG-mapper v2:

[1] eggNOG-mapper v2: functional annotation, orthology assignments, and domain                                                                         
     prediction at the metagenomic scale. Carlos P. Cantalapiedra,                                                                                    
     Ana Hernandez-Plaza, Ivica Letunic, Peer Bork, Jaime Huerta-Cepas.                                                                               
     biorxiv (2021). doi: https://doi.org/10.1101/2021.06.03.446934
[2] eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated
     orthology resource based on 5090 organisms and 2502 viruses. Jaime
     Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia
     K Forslund, Helen Cook, Daniel R Mende, Ivica Letunic, Thomas Rattei, Lars
     J Jensen, Christian von Mering, Peer Bork Nucleic Acids Res. 2019 Jan 8;
     47(Database issue): D309–D314. doi: 10.1093/nar/gky1085