Difference between revisions of "Trinotate"

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*signalP v4
 
*signalP v4
*tmhmm v2
 
 
*RNAMMER
 
*RNAMMER
  

Latest revision as of 20:29, 7 December 2023

Description

trinotate website  

Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms. Trinotate makes use of a number of different well referenced methods for functional annotation including homology search to known sequence data (BLAST+/SwissProt/Uniref90), protein domain identification (HMMER/PFAM), protein signal peptide and transmembrane domain prediction (singalP/tmHMM), and comparison to currently curated annotation databases (EMBL Uniprot eggNOG/GO Pathways databases). All functional annotation data derived from the analysis of transcripts is integrated into a SQLite database which allows fast efficient searching for terms with specific qualities related to a desired scientific hypothesis or a means to create a whole annotation report for a transcriptome.

Environment Modules

Run module spider trinotate to find out what environment modules are available for this application.

System Variables

  • HPC_TRINOTATE_DIR - installation directory

Additional Information

Additional software included in this module:

  • signalP v4
  • RNAMMER