Difference between revisions of "TraCeR"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|tracer}} |{{#vardefine:url|https://github.com/Teichlab/tracer}...") |
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| − | + | To copy and use your own tracer config file use $ cp $HPC_TRACER_DIR/tracer.conf . | |
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Revision as of 18:02, 1 June 2016
Description
This tool reconstructs the sequences of rearranged and expressed T cell receptor genes from single-cell RNA-seq data. It then uses the TCR sequences to identify cells that have the same receptor sequences and so derive from the same original clonally-expanded cell.
Required Modules
Serial
- tracer
System Variables
- HPC_{{#uppercase:tracer}}_DIR - installation directory
Additional Information
To copy and use your own tracer config file use $ cp $HPC_TRACER_DIR/tracer.conf .