Difference between revisions of "Structure"

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m (Text replacement - "#uppercase" to "uc")
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Sample files are located in the''$HPC_STRUCTURE_CONF'' directory.
 
Sample files are located in the''$HPC_STRUCTURE_CONF'' directory.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
[[Modules|modules documentation]]
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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WRITE CITATION HERE
 
WRITE CITATION HERE
 
|}}
 
|}}
=Validation=
 
* Validated 4/5/2018
 

Revision as of 17:05, 10 June 2022

Description

structure website  

Structure implements a model-based clustering method for inferring population structure using genotype data consisting of unlinked markers

You will have to provide the mainparams and extraparams files in a working directory from which you run the software or via the arguments:

  • -m /path/to/mainparams
  • -e /path/to/extraparams
  • -s /path/to/STRATparams

Sample files are located in the$HPC_STRUCTURE_CONF directory.

Environment Modules

Run module spider structure to find out what environment modules are available for this application.

System Variables

  • HPC_STRUCTURE_DIR - installation directory
  • HPC_STRUCTURE_BIN - executable directory
  • HPC_STRUCTURE_DOC - documentation directory
  • HPC_STRUCTURE_CONF - directory with sample configuration files