Difference between revisions of "Sputnik"

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m (Text replace - "{{#if: {{#var: mod}}|==Execution Environment and Modules== {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}" to "==Required Modules== modules documentation ===Serial=== *{{#var:app}}")
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==System Variables==
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* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
 
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{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
 
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DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY

Revision as of 17:22, 10 August 2012

Description

sputnik website  

Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors.

Required Modules

modules documentation

Serial

  • sputnik

System Variables

  • HPC_{{#uppercase:sputnik}}_DIR - installation directory