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Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors. | Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors. | ||
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==Available versions== | ==Available versions== | ||
Revision as of 02:00, 10 August 2012
Description
Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors.
Available versions
- 1.0
Running the application using modules
To use sputnik with the environment modules system at HPC the following commands are available:
Get module information for sputnik:
$module spider sputnik
Load the default application module:
$module load sputnik
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_SPUTNIK_DIR - directory where sputnik is located.