Search results

• MitoFinder
  Mitofinder is a pipeline to assemble mitochondrial genomes and extract mitochondrial genes from trim
  2 KB (255 words) - 21:23, 6 December 2019
• Quantas
  Quantas: A pipeline to analyze alternative splicing using RNA-Seq
  2 KB (247 words) - 20:29, 12 August 2022
• Varpipe-wgs
  This repository contains an analysis pipeline developed to characterize WGS output
  2 KB (261 words) - 16:22, 15 March 2023
• Mrtrix3tissue
  Improved bioinformatic pipeline to identify and quantify circRNA expression
  2 KB (255 words) - 16:51, 30 January 2023
• Toil
  Toil is a scalable, efficient, cross-platform pipeline management system, written entirely in Python, and designed around the prin
  2 KB (258 words) - 20:47, 12 August 2022
• Tapestri
  Pipeline developed by Mission Bio for the analysis of single-cell sequencing data in
  2 KB (258 words) - 19:07, 1 June 2022
• Merge peaks
  CWL-defined pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks
  2 KB (254 words) - 18:51, 15 August 2022
• BIRDS
  ...r efficient, versatile mapping of mouse brain）is an open source automation pipeline suitable for brain data from different microscopy platforms.
  2 KB (263 words) - 13:01, 15 August 2022
• FLEA
  |{{#vardefine:url|https://github.com/veg/flea-pipeline}} FLEA is a bioinformatics pipeline for analyzing longitudinal sequencing data from the Pacific Biosciences RS-
  2 KB (260 words) - 22:01, 27 August 2020
• Braker
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneM
  2 KB (261 words) - 22:28, 26 August 2020
• DeNoGAP
  Denovo Genome Analysis Pipeline for Prokaryotic Species
  2 KB (272 words) - 21:20, 6 December 2019
• Genmap
  Reginato M. 2022. A pipeline for assembling low-copy nuclear markers from plant genome skimming data for
  2 KB (256 words) - 21:20, 17 May 2023
• EPACTS
  ...and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide associatio
  2 KB (269 words) - 18:52, 12 August 2022
• TPP
  The Sashimi project develops the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics:
  2 KB (266 words) - 20:22, 24 August 2022
• NPhase
  [[Category:Pipeline]]
  2 KB (275 words) - 17:53, 15 August 2022
• Connectomemapper3
  Connectome Mapper 3 implements a full diffusion MRI processing pipeline that understands BIDS datasets, from raw Diffusion / T1 / T2 data to multi-
  2 KB (269 words) - 13:55, 15 August 2022
• TAPIS
  TAPIS (Transriptome Analysis Pipeline from Isoform Sequencing) is a program for correcting and aligning long read
  2 KB (273 words) - 16:14, 10 June 2022
• Ezaai
  ...link.springer.com/article/10.1007%2Fs12275-021-1154-0 Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
  2 KB (282 words) - 15:13, 15 August 2022
• Shovill
  Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the pr
  2 KB (286 words) - 18:13, 23 August 2022
• Velocyto
  Velocyto includes a command line tool and an analysis pipeline
  2 KB (275 words) - 00:33, 25 May 2023

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