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Bamm
...ology 2014, and Evolution 2015). BAMM is a command line program written in C++. Post-run analysis and visualization is performed using the R package BAM

3 KB (322 words) - 18:00, 12 August 2022
MRtrix
...felt, R. Tabbara, T. Dhollander, M. Pietsch, D. Christiaens, B. Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software frame

3 KB (311 words) - 20:34, 24 August 2022
GPU Access
...dia CUDA Toolkit]] page. The current CUDA environment is cuda/11. However, C++ or Python packages numba and PyCuda are other ways to program GPU algorit mamba install cudatoolkit=11.3 pytorch=1.12.1=gpu_cuda* -c pytorch

5 KB (767 words) - 20:15, 16 April 2024
Emerald
emeraLD v0.1 (c) 2018 corbin quick (corbinq@gmail.com)

3 KB (324 words) - 19:16, 29 October 2023
Silo
compile $(CC) -c yourfile.c and link with $(CLINKER) -o yourprog

3 KB (356 words) - 17:28, 10 June 2022
REMORA
[http://dl.acm.org/citation.cfm?id=2834999 C. Rosales, A. Gómez-Iglesias, A. Predoehl. "REMORA: a Resource Monitoring T

3 KB (330 words) - 20:39, 24 August 2022
Gawk
...e discarding the rest. To write a program to do this in a language such as C or Pascal is a time-consuming inconvenience that may take many lines of cod

3 KB (356 words) - 16:55, 15 August 2022
IsoSel
...id=10.1371/journal.pone.0174250 Philippon H., Souvane A., Brochier-Armanet C. and Perrière, G. (2017) IsoSel: Protein Isoform Selector for Phylogenetic

3 KB (345 words) - 14:29, 26 March 2021
TGICL
launch_tgicl tgicl -F sample.fasta -q sample.qual -c 4

3 KB (340 words) - 20:47, 12 August 2022
Finesse
Finesse is written in C and is compiled into a single binary executable called 'kat'. Today the pre

3 KB (347 words) - 00:01, 9 July 2020
Talon
...hua Zeng, Brian Williams, Diane Trout, Whitney England, Sophie Chu, Robert C. Spitale, Andrea J. Tenner, Barbara J. Wold, Ali Mortazavi bioRxiv 672931;

3 KB (321 words) - 15:13, 23 September 2022
SNPhylo
Lee, T. H., Guo, H., Wang, X., Kim, C., & Paterson, A. H. (2014). SNPhylo: a pipeline to construct a phylogenetic

3 KB (340 words) - 17:48, 10 June 2022
ElPrep
.../journals.plos.org/plosone/article?id=10.1371/journal.pone.0209523 Herzeel C, Costanza P, Decap D, Fostier J, Verachtert W (2019) elPrep 4: A multithrea

3 KB (345 words) - 21:20, 6 December 2019
SpliceGrapher
* M. F. Rogers, C. Boucher, A. Ben-Hur. SpliceGrapherXT: from splice graphs to transcripts us

3 KB (318 words) - 21:24, 6 December 2019
GeNomad
...chal Babinski, Yan Xu, Bin Hu, Patrick S. G. Chain, Stephen Nayfach, Nikos C. Kyrpides bioRxiv 2023.03.05.531206; doi: https://doi.org/10.1101/2023.03.0

3 KB (332 words) - 13:25, 7 April 2023
MGLTools
components implemented in Python and C++ (With Python bindings).

3 KB (357 words) - 17:03, 6 June 2022
DeepGS
...5-018-2976-9 Ma, W., Qiu, Z., Song, J., Li, J., Cheng, Q., Zhai, J., & Ma, C. (2018). A deep convolutional neural network approach for predicting phenot

3 KB (342 words) - 22:21, 26 August 2020
Hiphase
[https://doi.org/10.1093/bioinformatics/btae042 Holt, J. M., Saunders, C. T., Rowell, W. J., Kronenberg, Z., Wenger, A. M., & Eberle, M. (2024). HiP

3 KB (337 words) - 20:21, 19 March 2024
AI Help
...loped by Facebook AI Research Lab and has interfaces for Python, Java, and C++, but is most commonly used with Python. It supports training on both GPU ...-GPU and distributed training. APIs are available for Python, Java, Go and C++. See our [[TensorFlow|TensorFlow quickstart page]] for help getting start

6 KB (870 words) - 17:17, 22 April 2024
Probalign
...CH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequ

3 KB (349 words) - 19:36, 21 August 2022

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