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• DeSALT
  alignment, deSALT is a fast and accurate RNA-seq long read alignment
  3 KB (350 words) - 14:38, 15 August 2022
• MMSEQ
  The MMSEQ package contains a collection of statistical tools for analysing RNA-seq expression data. Expression levels are inferred for each transcript using t
  3 KB (387 words) - 20:50, 18 August 2022
• ANNOVAR
  ...sitivity sites, ENCODE H3K4Me1/H3K4Me3/H3K27Ac/CTCF sites, ChIP-Seq peaks, RNA-Seq peaks, or many other annotations on genomic intervals.
  4 KB (545 words) - 14:16, 12 August 2022
• MCarts
  3 KB (399 words) - 14:53, 14 December 2022
• FLAIR
  3 KB (305 words) - 18:34, 12 July 2023
• RSEM
  ...a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly interface, supports thread
  3 KB (390 words) - 21:59, 21 August 2022
• VirusFinder
  ...ith include whole genome sequencing (WGS), whole transcriptome sequencing (RNA-Seq), targeted sequencing data such as whole exome sequencing (WES) and ultra-d
  3 KB (410 words) - 21:29, 6 December 2019
• SHAPE-MaP
  3 KB (325 words) - 17:25, 10 June 2022
• BLASTDB
  7 KB (975 words) - 18:52, 10 April 2024
• RNAstructure
  3 KB (359 words) - 21:58, 21 August 2022
• RNAsalsa
  3 KB (368 words) - 21:24, 6 December 2019
• Dretools
  2 KB (226 words) - 16:05, 22 May 2023
• PsRobot
  2 KB (242 words) - 17:12, 1 June 2022
• Arcashla
  2 KB (250 words) - 19:33, 24 July 2023
• Mirdeep
  2 KB (254 words) - 18:00, 27 May 2022
• CIRI
  2 KB (253 words) - 21:11, 6 December 2019
• Dancemapper
  2 KB (252 words) - 22:13, 6 March 2023
• Randfold
  2 KB (262 words) - 21:29, 21 August 2022
• CasOFFinder
  2 KB (254 words) - 21:58, 26 August 2020
• Matt
  2 KB (257 words) - 21:03, 6 April 2023
• Virsorter
  2 KB (261 words) - 21:12, 21 October 2022
• Starseqr
  2 KB (269 words) - 17:12, 31 May 2022
• NanoCount
  2 KB (268 words) - 20:28, 14 May 2020
• Mfold
  2 KB (277 words) - 19:51, 12 August 2022
• Tantan
  2 KB (280 words) - 19:04, 1 June 2022
• CPAT
  2 KB (277 words) - 16:34, 10 June 2022
• RNAhybrid
  2 KB (285 words) - 20:56, 12 August 2022
• CIRCexplorer2
  2 KB (286 words) - 21:03, 6 December 2019
• FSA
  3 KB (307 words) - 20:38, 23 May 2022
• IVA
  2 KB (300 words) - 16:06, 7 December 2021
• TRUST4
  3 KB (314 words) - 20:12, 8 February 2021
• TaxMaps
  3 KB (321 words) - 15:45, 19 August 2022
• Geomxngspipeline
  3 KB (332 words) - 17:51, 29 January 2024
• IDBA-MT
  3 KB (315 words) - 21:21, 6 December 2019
• DOT
  3 KB (340 words) - 14:46, 15 August 2022
• Humann2
  3 KB (348 words) - 22:26, 27 August 2020
• UNAFold
  3 KB (359 words) - 20:53, 12 August 2022
• Annocript
  3 KB (387 words) - 21:18, 6 December 2019
• PGDSpider
  3 KB (387 words) - 19:04, 10 June 2022
• MitoPhAST
  3 KB (382 words) - 14:27, 23 April 2020
• HISAT2
  3 KB (399 words) - 19:31, 24 August 2022
• CNCI
  3 KB (374 words) - 14:09, 23 April 2021
• TRNAscan-Se
  3 KB (389 words) - 20:53, 12 August 2022
• CoMap
  3 KB (378 words) - 18:39, 12 August 2022
• Circtools
  3 KB (433 words) - 19:03, 27 January 2023
• Segemehl
  3 KB (406 words) - 22:30, 21 August 2022
• SAMStat
  3 KB (429 words) - 20:34, 12 August 2022
• BLAT
  3 KB (484 words) - 13:03, 15 August 2022

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