Difference between revisions of "Samblaster"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|samblaster}} |{{#vardefine:url|https://github.com/GregoryFa...") |
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Revision as of 18:46, 5 April 2018
Description
samblaster is a fast and flexible program for marking duplicates in read-id sorted paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file.
When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.
Required Modules
Serial
- samblaster
System Variables
- HPC_{{#uppercase:samblaster}}_DIR - installation directory
- HPC_{{#uppercase:samblaster}}_DIR - executable directory
Validation
- Validated 4/5/2018