Difference between revisions of "SVDetect"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGSCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|svdetect}} |{{#vardefine:url|http://sv...") |
(No difference)
|
Revision as of 15:50, 24 March 2014
Description
SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies
This tool aims to identifying structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale.
SVDetect is compatible with SOLiD and Illumina (>=1.3) reads.
Required Modules
Serial
- svdetect
System Variables
- HPC_{{#uppercase:svdetect}}_DIR