Difference between revisions of "SOAPdenovo-Trans"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 25: | Line 25: | ||
*{{#var:app}} | *{{#var:app}} | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located | * HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located | ||
<!--Additional--> | <!--Additional--> | ||
Revision as of 21:24, 6 December 2019
Description
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.
Required Modules
Serial
- soapdenovo-trans
System Variables
- HPC_SOAPDENOVO-TRANS_DIR - installation directory
- HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located
Validation
- Validated 4/5/2018