Difference between revisions of "SMC++"

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m (Text replacement - "#uppercase" to "uc")
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
 
 
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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<!--Run-->
 
<!--Run-->
 
{{#if: {{#var: exe}}|==Additional Information==
 
{{#if: {{#var: exe}}|==Additional Information==
 
 
WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY
 
WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY
 
 
|}}
 
|}}
 
<!--Job Scripts-->
 
<!--Job Scripts-->
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<!--Policy-->
 
<!--Policy-->
 
{{#if: {{#var: policy}}|==Usage Policy==
 
{{#if: {{#var: policy}}|==Usage Policy==
 
 
WRITE USAGE POLICY HERE (Licensing, usage, access).
 
WRITE USAGE POLICY HERE (Licensing, usage, access).
 
 
|}}
 
|}}
 
<!--Performance-->
 
<!--Performance-->
 
{{#if: {{#var: testing}}|==Performance==
 
{{#if: {{#var: testing}}|==Performance==
 
 
WRITE_PERFORMANCE_TESTING_RESULTS_HERE
 
WRITE_PERFORMANCE_TESTING_RESULTS_HERE
 
 
|}}
 
|}}
 
<!--Faq-->
 
<!--Faq-->

Revision as of 12:34, 25 March 2022

Description

smcpp website  

SMC++ is a program for estimating the size history of populations from whole genome sequence data.

System Variables

  • HPC_SMCPP_DIR - installation directory
  • HPC_SMCPP_BIN - executable directory




Citation

If you publish research that uses smcpp you have to cite it as follows:

J. Terhorst, J. A. Kamm, and Y. S. Song. Robust and scalable inference of population history from hundreds of unphased whole genomes. Nature Genetics, 49(2):303–309, 2017.