Difference between revisions of "RepeatModeler"
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Revision as of 21:29, 8 December 2015
Description
RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.
Required Modules
Serial
- repeatmodeler
System Variables
- HPC_{{#uppercase:repeatmodeler}}_DIR - installation directory