RMATS-turbo

From UFRC
Revision as of 18:14, 8 March 2022 by Johnbullard (talk | contribs) (Created page with "Category:Software Category:Biology Category:Genomics Category:Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|rMATS-turbo}} |{{#vardefine:url|htt...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

rMATS-turbo website  

rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net). The major difference between rMATS turbo and rMATS is speed and space usage. rMATS turbo is 100 times faster and the output file is 1000 times smaller than rMATS. These advantages make analysis and storage of a large scale dataset easy and convenient.

Environment Modules

Run module spider rMATS-turbo to find out what environment modules are available for this application.

System Variables

  • HPC_RMATSTURBO_DIR - installation directory
  • HPC_RMATSTURBO_BIN - executable directory


Job Script Examples

See the RMATS-turbo_Job_Scripts page for rMATS-turbo Job script examples.