Difference between revisions of "Package-GFE"

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[[Category:Software]][[Category:SoftwareBiology]][[Category:Genomics]]
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[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|package-gfe}}
 
|{{#vardefine:app|package-gfe}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 16:45, 10 June 2022

Description

package-gfe website  

This software package is for estimating allele and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for multiple diploid individuals from a population by a maximum-likelihood (ML) method.

Environment Modules

Run module spider package-gfe to find out what environment modules are available for this application.

System Variables

  • HPC_PACKAGE-GFE_DIR - installation directory




Citation

If you publish research that uses package-gfe you have to cite it as follows:

Maruki, T., and Lynch, M., (2015) Genotype-frequency estimation from high-throughput sequencing data. Genetics (in press).