PBJelly

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Revision as of 20:18, 12 August 2022 by Israel.herrera (talk | contribs)
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Description

PBJelly website  

PBJelly is a highly automated pipeline that aligns long sequencing reads (such a PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly's workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes.

Environment Modules

Run module spider PBJelly to find out what environment modules are available for this application.

System Variables

  • HPC_PBJELLY_DIR - installation directory
  • HPC_PBJELLY_BIN
  • HPC_PBJELLY_CONF
  • HPC_PBJELLY_TEST

Additional Information

This module includes the full PBSuite.