Difference between revisions of "P53MH"
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DAT - example data directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | p53MH requires a data file. You can copy the example data file to your current working directory with the follow command: | |
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| + | ml p53mh | ||
| + | cp $HPC_P53MH_DAT/* . | ||
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{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
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Latest revision as of 18:35, 10 June 2022
Description
Computes a score between 0 and 100 for each site in the DNA sequence of a gene. A high score indicates an increased probability that n nucleotides at that and subsequent sites represent a p53 binding site, where n = 2 x 10 + (selected length of spacer region).
Environment Modules
Run module spider p53mh to find out what environment modules are available for this application.
System Variables
- HPC_P53MH_DIR - installation directory
- HPC_P53MH_BIN - executable directory
- HPC_P53MH_DAT - example data directory
Additional Information
p53MH requires a data file. You can copy the example data file to your current working directory with the follow command:
ml p53mh cp $HPC_P53MH_DAT/* .
Citation
If you publish research that uses p53mh you have to cite it as follows: