OptiType
Revision as of 16:37, 10 June 2022 by Israel.herrera (talk | contribs)
Description
OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
Environment Modules
Run module spider optitype to find out what environment modules are available for this application.
System Variables
- HPC_OPTITYPE_DIR - installation directory
- HPC_OPTITYPE_BIN - executable directory
- HPC_OPTITYPE_EXE - test directory
- HPC_OPTITYPE_DOC - documentation directory
- HPC_OPTITYPE_CONF - config directory