Difference between revisions of "OptiType"
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Revision as of 15:49, 1 November 2017
Description
OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles.
Required Modules
Serial
- optitype
System Variables
- HPC_{{#uppercase:optitype}}_DIR - installation directory
- HPC_{{#uppercase:optitype}}_BIN - executable directory
- HPC_{{#uppercase:optitype}}_EXE - test directory
- HPC_{{#uppercase:optitype}}_DOC - documentation directory
- HPC_{{#uppercase:optitype}}_CONF - config directory